View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21146_low_1 (Length: 357)
Name: NF21146_low_1
Description: NF21146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21146_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 9e-92; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 152 - 354
Target Start/End: Original strand, 40351124 - 40351326
Alignment:
| Q |
152 |
ttaacatgtgtgtatgtataacgtataatataattaaaggtaacattcatgtttcaataaaatattaaacaatgatagttgtggggtagaaacaattctc |
251 |
Q |
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| T |
40351124 |
ttaacatgtgtgtatgtataacgtataatataattaaaggtaacattcatgtttcaataaaatattaaacaatgatagttgtggggtagaaacaattctt |
40351223 |
T |
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| Q |
252 |
acgtaggtagatgctaactttcttttagaaatgagtttggatgagaattgatttctaaaattaaactcatcatcaaatatatgtttaaaatgttgaatca |
351 |
Q |
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| T |
40351224 |
acgtaagtagatgttaactttcttttagaattgagtttggatgaaaatttgtttctaaaattaaactcattatcaaatatatgtttaaaatgttgaatca |
40351323 |
T |
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| Q |
352 |
cat |
354 |
Q |
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| T |
40351324 |
cat |
40351326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 51 - 153
Target Start/End: Original strand, 40350971 - 40351075
Alignment:
| Q |
51 |
atacttatgagtctcagggaaaggggccatataaatcaaattcaatagccggaagataagtatagtgtaact--aaattattcaatccaaaagtcaaata |
148 |
Q |
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| T |
40350971 |
atacttgtgagtctcagggaaagtggccatacaaatcaaattcagtagccgaaagataagtatagtgtaactaaaaattattcaatccaaaagtcaaata |
40351070 |
T |
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| Q |
149 |
ttctt |
153 |
Q |
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||||| |
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| T |
40351071 |
ttctt |
40351075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 276 - 354
Target Start/End: Original strand, 40355718 - 40355796
Alignment:
| Q |
276 |
ttagaaatgagtttggatgagaattgatttctaaaattaaactcatcatcaaatatatgtttaaaatgttgaatcacat |
354 |
Q |
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| T |
40355718 |
ttagaaatgagttttgattagaattaatttctaaaatcattatcaacatcaaacacatgtttaaaatgttgaatcacat |
40355796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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