View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21147_high_5 (Length: 328)
Name: NF21147_high_5
Description: NF21147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21147_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 33 - 312
Target Start/End: Complemental strand, 38942173 - 38941895
Alignment:
| Q |
33 |
ggtgtttgtttcccagcttaagattttcagtgaaaagtacaaaggtataccaactcatttcttcatcttatatctttcattctagggaagnnnnnnnnag |
132 |
Q |
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| T |
38942173 |
ggtgtttgtttcccagcttaggattttcagtaaaaagtacaaaggtataccaactcatttcttcatcttatatctttcattctagggaagttttttt-ag |
38942075 |
T |
|
| Q |
133 |
cttttagaactttaaaatctgaccnnnnnnnngagttataaagctttataatcttaaaagcaggttaccttagagtattactttgttaaaatcgtgttac |
232 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| | ||||| |
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| T |
38942074 |
cttttagaactttaaaatctgattttttttttgagttataaagctttataatcttaaaagcatgttaccttaaagtattactttgttaaaagcaggttac |
38941975 |
T |
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| Q |
233 |
tttttcaataggattttaaagaagtttttgaacttacgtatctgacctttttgaatctatgaagctgtattagttagttt |
312 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38941974 |
tttttcaataggattttaaagaagtttttgaacttacatatctgacctttttgaatctatgaagctgtattagttagttt |
38941895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 228 - 312
Target Start/End: Complemental strand, 52019773 - 52019689
Alignment:
| Q |
228 |
gttactttttcaataggattttaaagaagtttttgaacttacgtatctgacctttttgaatctatgaagctgtattagttagttt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||| |
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| T |
52019773 |
gttactttttcaataggattttaaagaagtttttgaacttacatatctgatccttttgaatctatgaagctgtattagttagttt |
52019689 |
T |
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