View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21147_low_10 (Length: 235)

Name: NF21147_low_10
Description: NF21147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21147_low_10
NF21147_low_10
[»] chr3 (2 HSPs)
chr3 (1-228)||(39712253-39712483)
chr3 (1-216)||(11527878-11528094)
[»] chr1 (2 HSPs)
chr1 (23-228)||(40768118-40768329)
chr1 (23-228)||(13228609-13228820)
[»] chr2 (5 HSPs)
chr2 (23-228)||(28166167-28166378)
chr2 (28-204)||(37952800-37952976)
chr2 (23-204)||(44905035-44905223)
chr2 (50-194)||(37958560-37958704)
chr2 (50-194)||(37896498-37896642)
[»] chr4 (2 HSPs)
chr4 (23-187)||(11149354-11149524)
chr4 (23-204)||(34538655-34538841)
[»] chr7 (1 HSPs)
chr7 (23-204)||(38757172-38757359)
[»] chr5 (1 HSPs)
chr5 (47-228)||(6535327-6535513)


Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 39712483 - 39712253
Alignment:
Q  1 ttgctcaaagtcaaagcactggagaacatgaagattcttttaaggtaattattgcttttggaaaagaagaaattgaagggatgaaaaaatgggtgctgaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39712483 ttgctcaaagtcaaagcactggagaacatgaagattcttttaaggtaattattgcttttggaaaagaagaaattgaggggatgaaaaaatgggtgctgaa 39712384  T
Q  101 tcaatggaagaaaaatga---taatgaaatcaacgtgccaaaatttctatctaaatttgttgtaacttctgcttttgtttgggctagtatggttaaagca 197  Q
    ||||||||||||||||||   ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39712383 tcaatggaagaaaaatgataataatgaaatcaacgtgccaaaatttatatctaaatttgttgtaacttctgcttttgtttgggctagtatggttgaagca 39712284  T
Q  198 atgcataaaaatgatgatggtggtgatgatg 228  Q
    |||||||||||||||||||||||||||||||    
T  39712283 atgcataaaaatgatgatggtggtgatgatg 39712253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 11528094 - 11527878
Alignment:
Q  1 ttgctcaaagtcaaagcactggagaacatgaagattcttttaaggtaattattgcttttggaaaagaagaaattgaagggatgaaaaaa-tgggtgctga 99  Q
    ||||| ||||||||||||  | ||||||| |||||| | |||||| |||||||| |||||||||||||||||||||  ||||||||||| |  |||||||    
T  11528094 ttgctgaaagtcaaagcaaggaagaacatcaagattttgttaaggcaattattgtttttggaaaagaagaaattgagaggatgaaaaaaatatgtgctga 11527995  T
Q  100 atcaatggaagaaaaatgataatgaaatcaacgtgccaaaatttctatctaaatttgttgtaacttctgcttttgtttgggctagtatggttaaagcaat 199  Q
    |||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||| |||||| ||||||||||||||   |||| ||||    
T  11527994 atcaatggaagaaaaatgataacgaaatcaacgcgccacaatttctatctaaatttgttgtaacttgtgctttcgtttgggctagtataactaaaacaat 11527895  T
Q  200 gcataaaaatgatgatg 216  Q
     |||| ||| |||||||    
T  11527894 acatagaaacgatgatg 11527878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 23 - 228
Target Start/End: Complemental strand, 40768329 - 40768118
Alignment:
Q  23 agaacatgaagattcttttaaggtaattattgcttttggaaaagaagaaattgaagggatgaaaaaatgggtgctgaatcaatggaagaaaaatg----- 117  Q
    |||||||||||||| | |||||| |||||||| ||||||||||||||||||||| |||||||||||||  || ||||||||||||||||||||||         
T  40768329 agaacatgaagattttgttaaggcaattattgtttttggaaaagaagaaattgaggggatgaaaaaatatgtactgaatcaatggaagaaaaatggcaac 40768230  T
Q  118 -ataatgaaatcaacgtgccaaaatttctatctaaatttgttgtaacttctgcttttgtttgggctagtatggttaaagcaatgcataaaaatgatgatg 216  Q
     |||| ||||||||||||||| ||||||||||||||||||| ||||||| || ||| |||||||||||||| ||||||||||| |||| | |||||||||    
T  40768229 gataaggaaatcaacgtgccacaatttctatctaaatttgtcgtaacttgtgatttcgtttgggctagtatagttaaagcaatacatagatatgatgatg 40768130  T
Q  217 gtggtgatgatg 228  Q
     ||| |||||||    
T  40768129 atggcgatgatg 40768118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 23 - 228
Target Start/End: Original strand, 13228609 - 13228820
Alignment:
Q  23 agaacatgaagattcttttaaggtaattattgcttttggaaaagaagaaattgaagggatgaaaaaatgggtgctgaatcaatggaagaaaaatg----- 117  Q
    |||||||||||||| | |||||  |||||||| |||| |||||||||||||||| |||||||||||||  || ||||||||||||||||||||||         
T  13228609 agaacatgaagattttgttaagacaattattgtttttagaaaagaagaaattgaggggatgaaaaaatatgtactgaatcaatggaagaaaaatggcaac 13228708  T
Q  118 -ataatgaaatcaacgtgccaaaatttctatctaaatttgttgtaacttctgcttttgtttgggctagtatggttaaagcaatgcataaaaatgatgatg 216  Q
     |||| |||||||||| |||| ||||||||||||||||||| ||||||| |||||| ||||||||||||||  |||||||||| |||| | | |||||||    
T  13228709 gataaggaaatcaacgcgccacaatttctatctaaatttgtcgtaacttgtgctttcgtttgggctagtatatttaaagcaatacatagatacgatgatg 13228808  T
Q  217 gtggtgatgatg 228  Q
     ||| |||||||    
T  13228809 atggcgatgatg 13228820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 8e-48; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 23 - 228
Target Start/End: Complemental strand, 28166378 - 28166167
Alignment:
Q  23 agaacatgaagattcttttaaggtaattattgcttttggaaaagaagaaattgaagggatgaaaaaatgggtgctgaatcaatggaagaaaaat------ 116  Q
    |||||||||||||| | |||| | |||||||| ||||||||||||||||||||| |||||||||||||  || |||||||||||||||||||||          
T  28166378 agaacatgaagattttattaaagcaattattgtttttggaaaagaagaaattgaggggatgaaaaaatatgtactgaatcaatggaagaaaaatggcaac 28166279  T
Q  117 gataatgaaatcaacgtgccaaaatttctatctaaatttgttgtaacttctgcttttgtttgggctagtatggttaaagcaatgcataaaaatgatgatg 216  Q
    ||||| ||||||||||||||| |||||||| |||||||||| ||||||| |||||| |||||| ||||||| ||||||||||| |||| | | |||||||    
T  28166278 gataaagaaatcaacgtgccacaatttctaactaaatttgtcgtaacttgtgctttcgtttggtctagtatagttaaagcaatacatagatacgatgatg 28166179  T
Q  217 gtggtgatgatg 228  Q
     ||| |||||||    
T  28166178 atggcgatgatg 28166167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 28 - 204
Target Start/End: Original strand, 37952800 - 37952976
Alignment:
Q  28 atgaagattcttttaaggtaattattgcttttggaaaagaagaaattgaagggatgaaaaaatgggtgctgaatcaatggaagaaaaatgataatgaaat 127  Q
    ||||||||| | |||||| |||||||| ||| |||||||||||||| || |||||||||||||||||  ||||| ||||||||||||| ||| | |||||    
T  37952800 atgaagattgtgttaaggcaattattgttttcggaaaagaagaaatcgaggggatgaaaaaatgggtattgaatgaatggaagaaaaaagatcaagaaat 37952899  T
Q  128 caacgtgccaaaatttctatctaaatttgttgtaacttctgcttttgtttgggctagtatggttaaagcaatgcata 204  Q
    | | |  ||| ||||||||||||||| ||||||||||| |||||||||||||| |||| ||||||||||||||||||    
T  37952900 ccaagcaccacaatttctatctaaatatgttgtaacttgtgcttttgtttgggttagtttggttaaagcaatgcata 37952976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 23 - 204
Target Start/End: Complemental strand, 44905223 - 44905035
Alignment:
Q  23 agaacatgaagattcttttaaggtaattattgcttttggaaaagaagaaattgaagggatgaaaaaa-tgggtgctgaatcaatggaagaaaaatg---- 117  Q
    |||||||||| ||| | |||||| |||||||| ||||||||||||||||||||| |||||||||||| |  ||  || ||||||||||||||||||        
T  44905223 agaacatgaacattttgttaaggcaattattgtttttggaaaagaagaaattgaggggatgaaaaaaatatgtaatggatcaatggaagaaaaatggcaa 44905124  T
Q  118 --ataatgaaatcaacgtgccaaaatttctatctaaatttgttgtaacttctgcttttgtttgggctagtatggttaaagcaatgcata 204  Q
      |||| |||||||||| |||| ||||||||||||||||||| ||||||| |||||| |||||||||||||| ||||||||||| ||||    
T  44905123 cgataaggaaatcaacgcgccacaatttctatctaaatttgtcgtaacttgtgctttcgtttgggctagtatagttaaagcaatacata 44905035  T

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Target: chr2; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 50 - 194
Target Start/End: Original strand, 37958560 - 37958704
Alignment:
Q  50 tattgcttttggaaaagaagaaattgaagggatgaaaaaatgggtgctgaatcaatggaagaaaaatgataatgaaatcaacgtgccaaaatttctatct 149  Q
    ||||| ||||| |||||||||||||||  | ||||||| |||||  ||  ||||||||||||||||||||  |||| |  | | |||| ||||| |||||    
T  37958560 tattgtttttgcaaaagaagaaattgagagaatgaaaatatgggcacttgatcaatggaagaaaaatgattgtgaagttcaagcgccacaatttttatct 37958659  T
Q  150 aaatttgttgtaacttctgcttttgtttgggctagtatggttaaa 194  Q
    |||||||||||||||| || |||  ||||||||||||||||||||    
T  37958660 aaatttgttgtaacttgtggtttcatttgggctagtatggttaaa 37958704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 50 - 194
Target Start/End: Complemental strand, 37896642 - 37896498
Alignment:
Q  50 tattgcttttggaaaagaagaaattgaagggatgaaaaaatgggtgctgaatcaatggaagaaaaatgataatgaaatcaacgtgccaaaatttctatct 149  Q
    ||||| ||||| |||||| ||||||||  | ||||||| |||||  || ||||||||||||||||||||| ||||| |  | | |||| ||||  |||||    
T  37896642 tattgtttttgcaaaagaggaaattgagagaatgaaaatatgggcacttaatcaatggaagaaaaatgatcatgaagttcaagcgccacaattgttatct 37896543  T
Q  150 aaatttgttgtaacttctgcttttgtttgggctagtatggttaaa 194  Q
    |||||||||||||||| || |||  ||||| ||||| ||||||||    
T  37896542 aaatttgttgtaacttgtggtttcatttggtctagtttggttaaa 37896498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 23 - 187
Target Start/End: Original strand, 11149354 - 11149524
Alignment:
Q  23 agaacatgaagattcttttaaggtaattattgcttttggaaaagaagaaattgaagggatgaaaaaatgggtgctgaatcaatggaagaaaaatg----- 117  Q
    |||||||||||||| | |||||| |||||||| ||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||         
T  11149354 agaacatgaagattttgttaaggcaattattgtttttggaaaagaagaaattgaggggatgaaaaaatatgtgctgaatcaatggaagaaaaatggcaac 11149453  T
Q  118 -ataatgaaatcaacgtgccaaaatttctatctaaatttgttgtaacttctgcttttgtttgggctagtat 187  Q
     |||| ||||||||||||||| ||||||||||| | ||||| ||||||| |||||| | ||||| ||||||    
T  11149454 aataaggaaatcaacgtgccacaatttctatctcattttgtcgtaacttgtgctttcgcttgggttagtat 11149524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 23 - 204
Target Start/End: Complemental strand, 34538841 - 34538655
Alignment:
Q  23 agaacatgaagattcttttaaggtaattattgcttttggaaaagaagaaattgaagggatgaaaaaatgggtgctgaatcaatggaagaaaa-----atg 117  Q
    |||||||||||||| | |||||| |||||||| ||||||||||||||||||||| |||||||||||||  || || |||||||| || ||||     | |    
T  34538841 agaacatgaagattttgttaaggcaattattgtttttggaaaagaagaaattgaggggatgaaaaaatatgtacttaatcaatgaaaaaaaatggcaacg 34538742  T
Q  118 ataatgaaatcaacgtgccaaaatttctatctaaatttgttgtaacttctgcttttgtttgggctagtatggttaaagcaatgcata 204  Q
    |||| |||||||||| |||| ||||||||| |||||||||  |||||| |||||| |||||||||||||| ||||||||||| ||||    
T  34538741 ataaggaaatcaacgcgccacaatttctatgtaaatttgtcataacttatgctttcgtttgggctagtatagttaaagcaatacata 34538655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 23 - 204
Target Start/End: Complemental strand, 38757359 - 38757172
Alignment:
Q  23 agaacatgaagattcttttaaggtaattattgcttttggaaaagaagaaattgaagggatgaaaaaatgggtgctgaatcaatggaagaaaaatg----- 117  Q
    |||||||||||||| | ||||   |||||||| ||||| ||||||||||||||| |||||||||||||  |  ||||||||||||||||||||||         
T  38757359 agaacatgaagattttgttaaaacaattattgtttttgaaaaagaagaaattgaggggatgaaaaaatatgcactgaatcaatggaagaaaaatggcaac 38757260  T
Q  118 -ataatgaaatcaacgtgccaaaatttctatctaaatttgttgtaacttctgcttttgtttgggctagtatggttaaagcaatgcata 204  Q
     |||| |||||||||| || | ||||||||||||||||||| ||||||| |||||| |||||||||||||| ||||||||||| ||||    
T  38757259 gataaggaaatcaacgcgcaacaatttctatctaaatttgtcgtaacttgtgctttcgtttgggctagtatagttaaagcaatacata 38757172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 47 - 228
Target Start/End: Complemental strand, 6535513 - 6535327
Alignment:
Q  47 aattattgcttttggaaaagaagaaattgaagggatgaaaaaatgggtgctgaatcaatggaagaaaaatg------ataatgaaatcaacgtgccaaaa 140  Q
    |||||||| ||||||||||||||||||||  |||||||||||||  || || |||||||||||||||||||      ||||  ||||||||| |||| ||    
T  6535513 aattattgtttttggaaaagaagaaattgg-gggatgaaaaaatatgtacttaatcaatggaagaaaaatggcaacaataagaaaatcaacgcgccacaa 6535415  T
Q  141 tttctatctaaatttgttgtaacttctgcttttgtttgggctagtatggttaaagcaatgcataaaaatgatgatggtggtgatgatg 228  Q
    ||||||||||||||||  |||| || |||||| ||||| |||||||| ||||||||||| |||| | | ||||||| ||| |||||||    
T  6535414 tttctatctaaatttgccgtaatttgtgctttcgtttgagctagtatagttaaagcaatacatagatacgatgatgatggcgatgatg 6535327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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