View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21147_low_11 (Length: 234)

Name: NF21147_low_11
Description: NF21147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21147_low_11
NF21147_low_11
[»] chr3 (2 HSPs)
chr3 (1-223)||(39712496-39712718)
chr3 (41-222)||(11528147-11528328)
[»] chr4 (2 HSPs)
chr4 (58-222)||(11149099-11149263)
chr4 (58-222)||(34538932-34539096)
[»] chr2 (5 HSPs)
chr2 (58-222)||(28166469-28166633)
chr2 (58-222)||(44905314-44905478)
chr2 (65-220)||(37952535-37952690)
chr2 (24-220)||(37896715-37896911)
chr2 (57-220)||(37958279-37958442)
[»] chr7 (1 HSPs)
chr7 (58-222)||(38757450-38757614)
[»] chr1 (2 HSPs)
chr1 (58-210)||(13228366-13228518)
chr1 (66-222)||(40768428-40768584)


Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 39712496 - 39712718
Alignment:
Q  1 tccatgattttcttgtnnnnnnntaatctcttaaaataagatcctcaagtcctctagggtccttcaaaacttctctatcaaaacaaggtagtgacttcaa 100  Q
    ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39712496 tccatgattttcttgtaaaaaaataatctcttaaaataagatcctcaagtcctctagggtccttcaaaacttctctatcaaaacaaggtagtgacttcaa 39712595  T
Q  101 ttcagctgcttcacctccttgatggataaaagaccaagatttcatgaaatgattgcaactgttaccatccatcacgtggcaatatgtaatgccaatgcaa 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39712596 ttcagctgcatcacctccttgatggataaaagaccaagatttcatgaaatgattgcaactgttaccatccatcacgtggcaatatgtaatgccaatgcaa 39712695  T
Q  201 acaccatggttgggaaaaactga 223  Q
    |||||||||||||||||||||||    
T  39712696 acaccatggttgggaaaaactga 39712718  T

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Target: chr3; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 41 - 222
Target Start/End: Original strand, 11528147 - 11528328
Alignment:
Q  41 atcctcaagtcctctagggtccttcaaaacttctctatcaaaacaaggtagtgacttcaattcagctgcttcacctccttgatggataaaagaccaagat 140  Q
    ||||||||||||||| |||||| ||||||||||||| ||||||||||||||||| ||||||||| || | ||||||| ||||||||||||||||||||||    
T  11528147 atcctcaagtcctcttgggtccctcaaaacttctctgtcaaaacaaggtagtgatttcaattcaactacatcacctctttgatggataaaagaccaagat 11528246  T
Q  141 ttcatgaaatgattgcaactgttaccatccatcacgtggcaatatgtaatgccaatgcaaacaccatggttgggaaaaactg 222  Q
    ||||||||||||| ||||||  || ||||||||||||| |||||||| ||||||||||||| |||||||| |||||||||||    
T  11528247 ttcatgaaatgatcgcaacttctatcatccatcacgtgacaatatgtgatgccaatgcaaagaccatggtcgggaaaaactg 11528328  T

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Target: chr4 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 58 - 222
Target Start/End: Complemental strand, 11149263 - 11149099
Alignment:
Q  58 ggtccttcaaaacttctctatcaaaacaaggtagtgacttcaattcagctgcttcacctccttgatggataaaagaccaagatttcatgaaatgattgca 157  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||| || | |  ||||||||||||||||||||||||||||||||||||||||||||    
T  11149263 ggtccctcaaaacttctctatcaaaacaaggtagtgtcttcaattcaactacatttcctccttgatggataaaagaccaagatttcatgaaatgattgca 11149164  T
Q  158 actgttaccatccatcacgtggcaatatgtaatgccaatgcaaacaccatggttgggaaaaactg 222  Q
    ||| ||| ||||||||| |||||||||||| ||||||||||||| ||||||||  ||||||||||    
T  11149163 actattatcatccatcatgtggcaatatgtgatgccaatgcaaataccatggtcaggaaaaactg 11149099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 58 - 222
Target Start/End: Original strand, 34538932 - 34539096
Alignment:
Q  58 ggtccttcaaaacttctctatcaaaacaaggtagtgacttcaattcagctgcttcacctccttgatggataaaagaccaagatttcatgaaatgattgca 157  Q
    ||||| ||||||||||| | ||||||||||||||||||||||||||| || | |  |||||||||||||||||||| ||| |||||||||||||||||||    
T  34538932 ggtccctcaaaacttctttgtcaaaacaaggtagtgacttcaattcaactacatttcctccttgatggataaaagatcaatatttcatgaaatgattgca 34539031  T
Q  158 actgttaccatccatcacgtggcaatatgtaatgccaatgcaaacaccatggttgggaaaaactg 222  Q
    ||| ||| ||||||||||| | |||||||| ||||||||||||| ||||||||  ||||||||||    
T  34539032 actattatcatccatcacgggacaatatgtgatgccaatgcaaataccatggtcaggaaaaactg 34539096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 6e-55; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 58 - 222
Target Start/End: Original strand, 28166469 - 28166633
Alignment:
Q  58 ggtccttcaaaacttctctatcaaaacaaggtagtgacttcaattcagctgcttcacctccttgatggataaaagaccaagatttcatgaaatgattgca 157  Q
    ||||| ||||||||||||| ||||||||||||| ||||||||||||| || | |  ||||||||||||||||||||||||||||||||||||||||||||    
T  28166469 ggtccctcaaaacttctctgtcaaaacaaggtaatgacttcaattcaactacatttcctccttgatggataaaagaccaagatttcatgaaatgattgca 28166568  T
Q  158 actgttaccatccatcacgtggcaatatgtaatgccaatgcaaacaccatggttgggaaaaactg 222  Q
    ||| ||| |||||||||||||||||||||| ||||||||||||| ||||||||  ||||||||||    
T  28166569 actattatcatccatcacgtggcaatatgtgatgccaatgcaaataccatggtcaggaaaaactg 28166633  T

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Target: chr2; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 58 - 222
Target Start/End: Original strand, 44905314 - 44905478
Alignment:
Q  58 ggtccttcaaaacttctctatcaaaacaaggtagtgacttcaattcagctgcttcacctccttgatggataaaagaccaagatttcatgaaatgattgca 157  Q
    ||||| ||||||||||||| |||||||||| |||||||||||||||| || | |  ||||||||||||||||||||||||||||||||||||||||||||    
T  44905314 ggtccctcaaaacttctctgtcaaaacaagatagtgacttcaattcaactacatttcctccttgatggataaaagaccaagatttcatgaaatgattgca 44905413  T
Q  158 actgttaccatccatcacgtggcaatatgtaatgccaatgcaaacaccatggttgggaaaaactg 222  Q
    ||| ||| |||||||||||||||||||||| ||||||||||||| ||||||||  ||||||||||    
T  44905414 actattatcatccatcacgtggcaatatgtgatgccaatgcaaataccatggtcaggaaaaactg 44905478  T

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Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 65 - 220
Target Start/End: Complemental strand, 37952690 - 37952535
Alignment:
Q  65 caaaacttctctatcaaaacaaggtagtgacttcaattcagctgcttcacctccttgatggataaaagaccaagatttcatgaaatgattgcaactgtta 164  Q
    |||||||| ||| |||||||||||| | ||||| || ||| || | ||||||    ||||||||||||||||||||||||| ||||||||||||| ||||    
T  37952690 caaaacttgtctgtcaaaacaaggttgcgacttgaagtcaactacatcacctttacgatggataaaagaccaagatttcattaaatgattgcaacagtta 37952591  T
Q  165 ccatccatcacgtggcaatatgtaatgccaatgcaaacaccatggttgggaaaaac 220  Q
     |||||||||| ||||||||| | ||| ||||||||| |||||||||||| |||||    
T  37952590 tcatccatcacatggcaatatttgatggcaatgcaaagaccatggttggggaaaac 37952535  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 220
Target Start/End: Original strand, 37896715 - 37896911
Alignment:
Q  24 taatctcttaaaataagatcctcaagtcctctagggtccttcaaaacttctctatcaaaacaaggtagtgacttcaattcagctgcttcacctccttgat 123  Q
    ||||||||||| | || ||  ||||| ||| | |||||| | |||| || ||||||||||||||||  ||||||||| ||| || ||||||    |  ||    
T  37896715 taatctcttaagaaaacattttcaagcccttttgggtccctaaaaatttttctatcaaaacaaggtgttgacttcaagtcaactacttcacaatttctat 37896814  T
Q  124 ggataaaagaccaagatttcatgaaatgattgcaactgttaccatccatcacgtggcaatatgtaatgccaatgcaaacaccatggttgggaaaaac 220  Q
    | ||||||||||||||||||||||||||| | ||||   || ||||||| || || |||||||| ||  ||||||||| ||||||||| || |||||    
T  37896815 gcataaaagaccaagatttcatgaaatgactacaacaactatcatccattacatgacaatatgtgattgcaatgcaaagaccatggttagggaaaac 37896911  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 220
Target Start/End: Complemental strand, 37958442 - 37958279
Alignment:
Q  57 gggtccttcaaaacttctctatcaaaacaaggtagtgacttcaattcagctgcttcacctccttgatggataaaagaccaagatttcatgaaatgattgc 156  Q
    |||||| ||||||  | |||||||||||||||   ||||||||| ||| || ||||||    |  ||| |||||||||||||| |||||||||||| | |    
T  37958442 gggtccctcaaaaaatttctatcaaaacaaggagttgacttcaagtcaactacttcacaatttctatgtataaaagaccaagacttcatgaaatgactac 37958343  T
Q  157 aactgttaccatccatcacgtggcaatatgtaatgccaatgcaaacaccatggttgggaaaaac 220  Q
    |||   || ||||||| || || |||||||| ||  ||||||||| ||||||||| || |||||    
T  37958342 aacaactatcatccattacatgacaatatgtgattgcaatgcaaagaccatggttagggaaaac 37958279  T

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Target: chr7 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 58 - 222
Target Start/End: Original strand, 38757450 - 38757614
Alignment:
Q  58 ggtccttcaaaacttctctatcaaaacaaggtagtgacttcaattcagctgcttcacctccttgatggataaaagaccaagatttcatgaaatgattgca 157  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||| || | |  ||||||||||||||||||||||||||||||||||||||||||||    
T  38757450 ggtccctcaaaacttctctgtcaaaacaaggtagtgacttcaattcaactacatttcctccttgatggataaaagaccaagatttcatgaaatgattgca 38757549  T
Q  158 actgttaccatccatcacgtggcaatatgtaatgccaatgcaaacaccatggttgggaaaaactg 222  Q
    ||| ||| ||||||||| ||| |||||||| ||||||||||||| ||||||||  ||||||||||    
T  38757550 actattatcatccatcatgtgtcaatatgtgatgccaatgcaaataccatggtcaggaaaaactg 38757614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 58 - 210
Target Start/End: Complemental strand, 13228518 - 13228366
Alignment:
Q  58 ggtccttcaaaacttctctatcaaaacaaggtagtgacttcaattcagctgcttcacctccttgatggataaaagaccaagatttcatgaaatgattgca 157  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||| || | |  ||||||| ||||||||||||||||||||||||||||||||||||    
T  13228518 ggtccctcaaaacttctctgtcaaaacaaggtagtgacttcaattcaactacatttcctcctttatggataaaagaccaagatttcatgaaatgattgca 13228419  T
Q  158 actgttaccatccatcacgtggcaatatgtaatgccaatgcaaacaccatggt 210  Q
    ||| ||| |||||||||||||||||||||| ||||||||||||| ||||||||    
T  13228418 actattatcatccatcacgtggcaatatgtgatgccaatgcaaataccatggt 13228366  T

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Target: chr1; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 66 - 222
Target Start/End: Original strand, 40768428 - 40768584
Alignment:
Q  66 aaaacttctctatcaaaacaaggtagtgacttcaattcagctgcttcacctccttgatggataaaagaccaagatttcatgaaatgattgcaactgttac 165  Q
    ||||||||||| ||||||||||| ||||||||||||| | || | |   ||||||||||||||||||||||||||||||| |||||||||||||| |||     
T  40768428 aaaacttctctgtcaaaacaaggcagtgacttcaatttaactacattttctccttgatggataaaagaccaagatttcataaaatgattgcaactattat 40768527  T
Q  166 catccatcacgtggcaatatgtaatgccaatgcaaacaccatggttgggaaaaactg 222  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||    
T  40768528 catccatcacgtggcaatatgtgatgccaatgcaaataccatggttaggaaaaactg 40768584  T

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