View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21147_low_2 (Length: 400)
Name: NF21147_low_2
Description: NF21147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21147_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 4 - 378
Target Start/End: Original strand, 39293919 - 39294292
Alignment:
| Q |
4 |
aatggaagtgagaacaagttacgctcttagattaaacatggagtttcttttgatttcagggaaaacatttccaacacttgatccacgcacaggggaagtg |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39293919 |
aatggaagtgagaacaagttacgctcttagattaaacatggagtt-cttttgatttcagggaaaacatttccaacacttgatccacgcacaggggaagtg |
39294017 |
T |
|
| Q |
104 |
attgctcacgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagctcgtgaggcctttcataatggaccttgacctaaaatgagtgctt |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39294018 |
attgctcacgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagcttgcgaggcctttcataatggaccttgacctaaaatgagtgctt |
39294117 |
T |
|
| Q |
204 |
atgtaagcgtttccttcagagtgtcctttcttacatgaacttatatgagttttaaaattacgttgatgatgacttattgctgcgttttgctgatttggtt |
303 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39294118 |
atgtaagcatttccttcagcgtgtcctttcttacatgaacttatatgagttttaaaattacgttgatgatgacttattgctgcgttttgctgatttggtt |
39294217 |
T |
|
| Q |
304 |
gagaagcacagtgctgagattgcagctctggaggcatggaacaatggaaagctttattaacaggctgacaaagct |
378 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39294218 |
gagaagcacaatgccgagattgcagctctggaggcatggaacaatggaaagctttattaacaggctgacaaagct |
39294292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 35212811 - 35212746
Alignment:
| Q |
95 |
ggggaagtgattgctcacgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagct |
160 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||||| || |||||||| || |||||| |
|
|
| T |
35212811 |
ggggaagtgattgctcatgttgctgaaggtgatcaagaagatatcaatcgtgcagtatctgcagct |
35212746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 8357810 - 8357434
Alignment:
| Q |
1 |
ttgaatggaagtgagaacaagttacgctcttagattaaacatggagtttcttttgatttcagggaaaacatttccaacacttgatccacgcacaggggaa |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8357810 |
ttgaatggaagtgagaacaaattacgctcttagattaaacatggagttt-ttttgatttcagggaaaacatttccaacacttgatccacgcacaggggaa |
8357712 |
T |
|
| Q |
101 |
gtgattgctcacgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagctcgtgaggcctttcataatggaccttgacctaaaatgagtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
8357711 |
gtgattgctcacgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagctcgtgaggcctttcataatggaccttggcctaaaatgaatg |
8357612 |
T |
|
| Q |
201 |
cttatgtaagcgtttccttcagagtgtcctttcttacatgaacttatatgagttttaaaattacgttgatgatgacttattgctgcgttttgctgatttg |
300 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8357611 |
cttatgtaagcatttccttcagagtgtcctttcttacatgaacttatattagttttaaaattacgttgatgatgacttattgctgcgttttgctgatttg |
8357512 |
T |
|
| Q |
301 |
gttgagaagcacagtgctgagattgcagctctggaggcatggaacaatggaaagctttattaacaggctgacaaagct |
378 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8357511 |
gttgagaagcacaatgcttagattgcagctctggaggcatggaacaatggaaagctttattaacaggctgacaaagct |
8357434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 44000366 - 44000086
Alignment:
| Q |
1 |
ttgaatggaagtgagaacaagttacgctcttagattaaacatggagtttcttttgatttcagggaaaacatttccaacacttgatccacgcacaggggaa |
100 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44000366 |
ttgagtggaagtgagaacaagttaggctcttagattaaacacggagtttcttttgattccagggaaaacatttccaacacttgatccacgcacaggggaa |
44000267 |
T |
|
| Q |
101 |
gtgattgctcacgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagctcgtgaggcctttcataatggaccttgacctaaaatgagtg |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
44000266 |
gtgattgctcatgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagctcgtgaggcctttgataatggaccttggcctaaaatgagtg |
44000167 |
T |
|
| Q |
201 |
cttatgtaagcgtttccttcagagtgtcctttcttacatgaacttatatgagttttaaaattacgttgatgatgacttatt |
281 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||| ||||||||| ||| |||||| || ||||||||||||| ||||||| |
|
|
| T |
44000166 |
cttatgtaagcatttcctgcagagtgtcctttcttgcatgaacttctattagttttcaatttacgttgatgattacttatt |
44000086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 278 - 383
Target Start/End: Complemental strand, 44000058 - 43999953
Alignment:
| Q |
278 |
tattgctgcgttttgctgatttggttgagaagcacagtgctgagattgcagctctggaggcatggaacaatggaaagctttattaacaggctgacaaagc |
377 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
44000058 |
tattgttgcgatttgctgatttggttgagaagcacaatgatgagattgcagctctggaggcatggaacaatggaaagctttatgaacaggctgccaaagc |
43999959 |
T |
|
| Q |
378 |
tgaagt |
383 |
Q |
| |
|
|||||| |
|
|
| T |
43999958 |
tgaagt |
43999953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 26894376 - 26894437
Alignment:
| Q |
59 |
tcagggaaaacatttccaacacttgatccacgcacaggggaagtgattgctcacgttgctga |
120 |
Q |
| |
|
||||| ||||||||||||||| | |||||| | |||||||||||||||||||| |||||||| |
|
|
| T |
26894376 |
tcaggtaaaacatttccaacattggatccaaggacaggggaagtgattgctcatgttgctga |
26894437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University