View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21147_low_3 (Length: 397)
Name: NF21147_low_3
Description: NF21147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21147_low_3 |
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| [»] scaffold0618 (1 HSPs) |
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Alignment Details
Target: scaffold0618 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: scaffold0618
Description:
Target: scaffold0618; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 38 - 378
Target Start/End: Complemental strand, 7211 - 6871
Alignment:
| Q |
38 |
acattcatatattcgccataataaagtgtactcaaagcaaaaccacccatccatggagcccaaccttctgaatttatcaaaccatcaagattacttttca |
137 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7211 |
acattcatatattcgccataataaagtgtactcaaagcaaaaccacccatccatggagcccaaccttctgaatttatcaaaccatcaagattacttttca |
7112 |
T |
|
| Q |
138 |
taacaaccgttcttgaatatttctgccatggtctaccaagatatgttttaactgaattctgaaccgctttcaaatcatttgcagcggttatacggcagtt |
237 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||| |
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| T |
7111 |
taacaaccgttcttgaatatttctgccatggtctaccaagatatgttttaactgaattctgaatcgctttcaaatcacttgatgcggttatacggcagtt |
7012 |
T |
|
| Q |
238 |
atgtattataattcctgtgttttcattcggatctgttcttccttgtgctgttacggtgttctgttggttgctcattggttttctgacaaagatgttgcag |
337 |
Q |
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|||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7011 |
atgtattacaattccagtgttttcatttggatctgttcttccttgtgctgttacggtgttctgttggttgctcattggttttctgacaaagatgttgcag |
6912 |
T |
|
| Q |
338 |
ttttgaaggacagtaacggcattaccgaagatgaaatcgat |
378 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| |
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| T |
6911 |
ttttgaaggacagtaacggcgttaccgaagatgaaatcgat |
6871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 38 - 378
Target Start/End: Complemental strand, 44087910 - 44087570
Alignment:
| Q |
38 |
acattcatatattcgccataataaagtgtactcaaagcaaaaccacccatccatggagcccaaccttctgaatttatcaaaccatcaagattacttttca |
137 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44087910 |
acattcatatattcgccataataaagtgtactcaaagcaaaaccacccatccatggagcccaaccttctgaatttatcaaaccatcaagattacttttca |
44087811 |
T |
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| Q |
138 |
taacaaccgttcttgaatatttctgccatggtctaccaagatatgttttaactgaattctgaaccgctttcaaatcatttgcagcggttatacggcagtt |
237 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||| |
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| T |
44087810 |
taacaaccgttcttgaatatttctgccatggtctaccaagatatgttttaactgaattctgaatcgctttcaaatcacttgatgcggttatacggcagtt |
44087711 |
T |
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| Q |
238 |
atgtattataattcctgtgttttcattcggatctgttcttccttgtgctgttacggtgttctgttggttgctcattggttttctgacaaagatgttgcag |
337 |
Q |
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|||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44087710 |
atgtattacaattccagtgttttcatttggatctgttcttccttgtgctgttacggtgttctgttggttgctcattggttttctgacaaagatgttgcag |
44087611 |
T |
|
| Q |
338 |
ttttgaaggacagtaacggcattaccgaagatgaaatcgat |
378 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||| |
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| T |
44087610 |
ttttgaaggacagtaacggcgttaccgaagatgaaatcgat |
44087570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 38 - 378
Target Start/End: Original strand, 44092700 - 44093040
Alignment:
| Q |
38 |
acattcatatattcgccataataaagtgtactcaaagcaaaaccacccatccatggagcccaaccttctgaatttatcaaaccatcaagattacttttca |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44092700 |
acattcatatattcgccataataaagtgtactcaaagcaaaaccacccatccatggagcccaaccttctgaatttatcaaaccatcaagattacttttca |
44092799 |
T |
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| Q |
138 |
taacaaccgttcttgaatatttctgccatggtctaccaagatatgttttaactgaattctgaaccgctttcaaatcatttgcagcggttatacggcagtt |
237 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||| |
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| T |
44092800 |
taacaaccgttcttgaatatttctgccatggtctaccaagatatgttttaactgaattctgaatcgctttcaaatcacttgatgcggttatacggcagtt |
44092899 |
T |
|
| Q |
238 |
atgtattataattcctgtgttttcattcggatctgttcttccttgtgctgttacggtgttctgttggttgctcattggttttctgacaaagatgttgcag |
337 |
Q |
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|||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
44092900 |
atgtattacaattccagtgttttcatttggatctgttcttccttgtgctgttacggtgttcttttggttgctcattggttttctgacaaagatgttgcag |
44092999 |
T |
|
| Q |
338 |
ttttgaaggacagtaacggcattaccgaagatgaaatcgat |
378 |
Q |
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| T |
44093000 |
ttttgaaggacagtaacggcgttaccgaagatgaaatcgat |
44093040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 38 - 298
Target Start/End: Original strand, 44067199 - 44067459
Alignment:
| Q |
38 |
acattcatatattcgccataataaagtgtactcaaagcaaaaccacccatccatggagcccaaccttctgaatttatcaaaccatcaagattacttttca |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44067199 |
acattcatatattcgccataataaagtgtactcaaagcaaaaccacccatccatggagcccaaccttctgaatttatcaaaccatcaagattacttttca |
44067298 |
T |
|
| Q |
138 |
taacaaccgttcttgaatatttctgccatggtctaccaagatatgttttaactgaattctgaaccgctttcaaatcatttgcagcggttatacggcagtt |
237 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44067299 |
taacaaccgttcttgaatgtttctgccatggtctaccaagatatgttttaaccgaattctgaaccgctttcaaatcatttgcagtggttatacggcagtt |
44067398 |
T |
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| Q |
238 |
atgtattataattcctgtgttttcattcggatctgttcttccttgtgctgttacggtgttc |
298 |
Q |
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| T |
44067399 |
atgtattataattcctgtgttttcattcggatctgttcttccttgtgctgttacggtgttc |
44067459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 291 - 378
Target Start/End: Original strand, 44067647 - 44067734
Alignment:
| Q |
291 |
cggtgttctgttggttgctcattggttttctgacaaagatgttgcagttttgaaggacagtaacggcattaccgaagatgaaatcgat |
378 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44067647 |
cggtgttctattggttgctcattggttttctgacaaagatgttgcagttttgaaggacagtaacggcgttaccgaagatgaaatcgat |
44067734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 8767322 - 8767261
Alignment:
| Q |
116 |
aaaccatcaagattacttttcataacaaccgttcttgaatatttctgccatggtctaccaag |
177 |
Q |
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| T |
8767322 |
aaaccatcaagaacagttttcatgaaaaccgttcttgaatatttttgccacggtctaccaag |
8767261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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