View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21147_low_7 (Length: 326)

Name: NF21147_low_7
Description: NF21147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21147_low_7
NF21147_low_7
[»] chr1 (1 HSPs)
chr1 (18-314)||(6320036-6320332)


Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 314
Target Start/End: Complemental strand, 6320332 - 6320036
Alignment:
Q  18 aaaaatatagatattgcaatcatattaccacatcataacaatagatttgcaaatatcaaaaaggaaaggatnnnnnnntatcaagaagaatgatattaat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  6320332 aaaaatatagatattgcaatcatattaccacatcataacaatagatttgcaaatatcaaaaaggaaaggataaaaaaatatcaagaagaatgatattaat 6320233  T
Q  118 taccagtgcagccatttgagcccatttatttcccatcttatgatgcaactcaatgattcggcgttcttcttcagcagtaattgcaccctttctgagatca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6320232 taccagtgcagccatttgagcccatttatttcccatcttatgatgcaactcaatgattcggcgttcttcttcagcagtaattgcaccctttctgagatca 6320133  T
Q  218 ggtctcaaatgatttgcccatcgtagacgacagcttttcccacagcgagcaagtccggtacatttccggactgaattccagtttccctcaccatatt 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6320132 ggtctcaaatgatttgcccatcgtagacgacagcttttcccacagcgagcaagtccggtacatttccggactgaattccagtttccctcaccatatt 6320036  T

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