View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21148_high_2 (Length: 449)

Name: NF21148_high_2
Description: NF21148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21148_high_2
NF21148_high_2
[»] chr5 (1 HSPs)
chr5 (15-373)||(23283061-23283420)
[»] chr4 (5 HSPs)
chr4 (15-258)||(51969979-51970228)
chr4 (201-259)||(46394750-46394808)
chr4 (15-103)||(18902770-18902858)
chr4 (15-65)||(24599500-24599550)
chr4 (90-130)||(56544031-56544071)
[»] chr3 (3 HSPs)
chr3 (28-135)||(23210235-23210341)
chr3 (134-245)||(52689597-52689708)
chr3 (127-209)||(5552043-5552125)
[»] chr8 (2 HSPs)
chr8 (96-170)||(10146555-10146631)
chr8 (142-226)||(8047700-8047784)
[»] chr7 (1 HSPs)
chr7 (127-171)||(41349671-41349715)
[»] chr6 (1 HSPs)
chr6 (147-231)||(9578600-9578684)
[»] chr1 (5 HSPs)
chr1 (151-230)||(24536426-24536505)
chr1 (15-109)||(17586228-17586322)
chr1 (208-257)||(9116389-9116438)
chr1 (35-64)||(9116457-9116486)
chr1 (15-64)||(24536317-24536366)


Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 15 - 373
Target Start/End: Original strand, 23283061 - 23283420
Alignment:
Q  15 agaagaagaaaagttgggtgtaccaaaagggaagaggaagagaaagttgtggtataagagagaagatgtcgtaccgtaaactaaactagggttttttcaa 114  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |     
T  23283061 agaagaagaaaagttgggtgtaccgaaagggaagaggaagagaaagttgtggcgtaagagagaagatgtcgtaccgtaaactaaactagggttttttgag 23283160  T
Q  115 acctcaaactcatatatatacacaaatatattttaataatttatttaacttattatcagacatgggtactcgagggcacgagtttcatcaaatccatgtt 214  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||  || |||||| |||| || ||||||||||||||| ||||    
T  23283161 acctcaaactcatatatatgcacaaatatattttaataatttacttaacttattatcggatctgagtactcaagggtaccagtttcatcaaatccgtgtt 23283260  T
Q  215 catattcataaaataatagataatcaaatacttatttattatacatgtgaataatactcgtttgcctaccatcccagtgcccatgatgaatttta-cctg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |    
T  23283261 catattcataaaataatagataatcaaatacttatttattatacatgtgaataatactcatttgcctaccatcccagtgcccatgatgaattttaccccg 23283360  T
Q  314 cggggtgtgggaagcaccattttgttgatgagcctcgacgagtaaaaataatatgttgca 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23283361 cggggtgtgggaagcaccattttgttgatgagcctcgacgagtaaaaataatatgttgca 23283420  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 258
Target Start/End: Complemental strand, 51970228 - 51969979
Alignment:
Q  15 agaagaagaaaagttgggtgtaccaaaagggaagaggaagagaaagttgtggtataagagagaagatgtcgta---ccgt---aaactaaactagggttt 108  Q
    |||||||||||| | ||||| |||||||||||||||||||| |||||||||  |||||||| |||||||||||   ||||   | | |||||||||||||    
T  51970228 agaagaagaaaactagggtgcaccaaaagggaagaggaagaaaaagttgtgacataagagaaaagatgtcgtacagccgtacaatattaaactagggttt 51970129  T
Q  109 tttcaaacctcaaactcatatatatacacaaatatattttaataatttatttaacttattatcagacatgggtactcgagggcacgagtttcatcaaatc 208  Q
    ||| | | ||||||||| || | | ||||||  ||| | || |||||||||||| |||||||  |  ||| |||  || || |||| || ||||||||||    
T  51970128 tttgagatctcaaactcttacacacacacaaggataatatagtaatttatttaatttattattgggtatgagtatccgtggacacgggtatcatcaaatc 51970029  T
Q  209 catgttcatattcataaaataatagataatcaaatacttatttattatac 258  Q
    | ||| ||||| | ||||||||||| || | ||||||   ||||||||||    
T  51970028 cgtgtccatatccttaaaataataggtagtaaaatacccgtttattatac 51969979  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 201 - 259
Target Start/End: Complemental strand, 46394808 - 46394750
Alignment:
Q  201 atcaaatccatgttcatattcataaaataatagataatcaaatacttatttattataca 259  Q
    ||||||||| ||| |||||||||| ||||||||||| ||||||||| ||||||||||||    
T  46394808 atcaaatccgtgtccatattcatataataatagatagtcaaatactcatttattataca 46394750  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 18902858 - 18902770
Alignment:
Q  15 agaagaagaaaagttgggtgtaccaaaagggaagaggaagagaaagttgtggtataagagagaagatgtcgtaccgtaaactaaactag 103  Q
    ||||||||||||  |  ||| ||||||||||||||| |||| |||||||||  |||||||| ||| ||||||||  |||||||||||||    
T  18902858 agaagaagaaaatctaagtgcaccaaaagggaagagcaagataaagttgtgacataagagaaaagttgtcgtacaataaactaaactag 18902770  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 24599550 - 24599500
Alignment:
Q  15 agaagaagaaaagttgggtgtaccaaaagggaagaggaagagaaagttgtg 65  Q
    ||||||| ||||  |||||| |||||||| |||||||||||||||||||||    
T  24599550 agaagaaaaaaatatgggtgcaccaaaagagaagaggaagagaaagttgtg 24599500  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 56544071 - 56544031
Alignment:
Q  90 gtaaactaaactagggttttttcaaacctcaaactcatata 130  Q
    |||||||||||||| ||||||| | ||||||||||||||||    
T  56544071 gtaaactaaactagagttttttgagacctcaaactcatata 56544031  T

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Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 28 - 135
Target Start/End: Original strand, 23210235 - 23210341
Alignment:
Q  28 ttgggtgtaccaaaagggaagaggaagagaaagttgtggtataagagagaagatgtcgtaccgtaaactaaactagggttttttcaaacctcaaactcat 127  Q
    ||||||| |||||||||||||||| ||||||||||||| ||||||||| ||| |||||| |  |  |||||| || |||||||| | ||||||| |||||    
T  23210235 ttgggtgcaccaaaagggaagagggagagaaagttgtgatataagagaaaagttgtcgtgcaatggactaaatta-ggttttttgagacctcaacctcat 23210333  T
Q  128 atatatac 135  Q
    ||||||||    
T  23210334 atatatac 23210341  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 245
Target Start/End: Original strand, 52689597 - 52689708
Alignment:
Q  134 acacaaatatattttaataatttatttaacttattatcagacatgggtactcgagggcacgagtttcatcaaatccatgttcatattcataaaataatag 233  Q
    ||||||| |||||||| ||||||| |||| ||||||||||| ||||| ||  | |||||| ||| ||||||||||  ||| ||||| ||||||||||| |    
T  52689597 acacaaagatattttagtaatttacttaatttattatcagatatgggcacctgtgggcacaagtatcatcaaatctgtgtccatatccataaaataatgg 52689696  T
Q  234 ataatcaaatac 245  Q
     || ||||||||    
T  52689697 ctagtcaaatac 52689708  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 209
Target Start/End: Original strand, 5552043 - 5552125
Alignment:
Q  127 tatatatacacaaatatattttaataatttatttaacttattatcagacatgggtactcgagggcacgagtttcatcaaatcc 209  Q
    ||||||||||||   |||||||| |||||||||||| |||||| |||  || | |||||| |||||||||| |||||||||||    
T  5552043 tatatatacacatcaatattttagtaatttatttaatttattaacaggtattgatactcgcgggcacgagtatcatcaaatcc 5552125  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 170
Target Start/End: Original strand, 10146555 - 10146631
Alignment:
Q  96 taaactagggttttttcaaacctcaaactcatatatatacacaaat--atattttaataatttatttaacttattat 170  Q
    |||||||||||||| | | ||||||||||| |||||||||| | |   ||||||||||||||||||||| |||||||    
T  10146555 taaactagggttttatgagacctcaaactcttatatatacatataagaatattttaataatttatttaatttattat 10146631  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 226
Target Start/End: Original strand, 8047700 - 8047784
Alignment:
Q  142 atattttaataatttatttaacttattatcagacatgggtactcgagggcacgagtttcatcaaatccatgttcatattcataaa 226  Q
    ||||||||||||||||||||| |||||| |||| | || ||| || || |||| || ||||||||||||||| ||| | ||||||    
T  8047700 atattttaataatttatttaatttattaacagatacggatacccgcggacacgggtatcatcaaatccatgtccatgtccataaa 8047784  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 41349715 - 41349671
Alignment:
Q  127 tatatatacacaaatatattttaataatttatttaacttattatc 171  Q
    |||||||||||||| |||||||| |||||||||||| ||||||||    
T  41349715 tatatatacacaaaaatattttagtaatttatttaatttattatc 41349671  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 231
Target Start/End: Complemental strand, 9578684 - 9578600
Alignment:
Q  147 ttaataatttatttaacttattatcagacatgggtactcgagggcacgagtttcatcaaatccatgttcatattcataaaataat 231  Q
    ||||||||||| |||| |||||||| |  |||||||| |  |||||||||| ||||||||| | ||| ||||| |||||||||||    
T  9578684 ttaataatttacttaatttattatcgggtatgggtacacatgggcacgagtatcatcaaattcgtgtccatatccataaaataat 9578600  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 230
Target Start/End: Original strand, 24536426 - 24536505
Alignment:
Q  151 taatttatttaacttattatcagacatgggtactcgagggcacgagtttcatcaaatccatgttcatattcataaaataa 230  Q
    ||||||| |||| |||||||| || |||||||| || || ||||||  ||||||||||| ||| ||||| ||||||||||    
T  24536426 taatttacttaatttattatcggatatgggtacccggggacacgagcatcatcaaatccgtgtccatatccataaaataa 24536505  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 17586322 - 17586228
Alignment:
Q  15 agaagaagaaaagttgggtgtaccaaaagggaagaggaagagaaagttgtggtataagagagaagatgtcgtaccgtaaactaaactagggtttt 109  Q
    |||||||||||| ||||||  | |||||||||| ||||| |||||||||||  |||||||| ||| | || |||  | ||||||||||| |||||    
T  17586322 agaagaagaaaatttgggttcagcaaaagggaaaaggaaaagaaagttgtgacataagagaaaagttatcttacaatcaactaaactagtgtttt 17586228  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 9116438 - 9116389
Alignment:
Q  208 ccatgttcatattcataaaataatagataatcaaatacttatttattata 257  Q
    |||||| ||||| ||||||||||  ||||||||||||| |||||||||||    
T  9116438 ccatgtccatatccataaaataacggataatcaaatacctatttattata 9116389  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 64
Target Start/End: Complemental strand, 9116486 - 9116457
Alignment:
Q  35 taccaaaagggaagaggaagagaaagttgt 64  Q
    ||||||||||||||||||||||||||||||    
T  9116486 taccaaaagggaagaggaagagaaagttgt 9116457  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 24536317 - 24536366
Alignment:
Q  15 agaagaagaaaagttgggtgtaccaaaagggaagaggaagagaaagttgt 64  Q
    ||||||||||||  ||| ||||| ||||||||||||||||| ||||||||    
T  24536317 agaagaagaaaacctggttgtacaaaaagggaagaggaagataaagttgt 24536366  T

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