View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21148_high_7 (Length: 272)

Name: NF21148_high_7
Description: NF21148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21148_high_7
NF21148_high_7
[»] chr7 (12 HSPs)
chr7 (68-262)||(42810447-42810641)
chr7 (155-262)||(42768530-42768642)
chr7 (155-249)||(42817454-42817548)
chr7 (1-66)||(37873429-37873494)
chr7 (1-66)||(24825571-24825636)
chr7 (1-66)||(24825858-24825923)
chr7 (1-66)||(32792795-32792860)
chr7 (1-66)||(32793081-32793146)
chr7 (1-64)||(37879148-37879211)
chr7 (1-62)||(11324346-11324407)
chr7 (11-66)||(9402572-9402627)
chr7 (12-66)||(11324065-11324119)
[»] chr4 (14 HSPs)
chr4 (68-262)||(33053165-33053359)
chr4 (1-66)||(23254675-23254740)
chr4 (1-66)||(15874240-15874305)
chr4 (1-62)||(41315915-41315976)
chr4 (1-66)||(23254389-23254454)
chr4 (1-66)||(42305917-42305982)
chr4 (1-65)||(20878706-20878770)
chr4 (1-64)||(42306202-42306265)
chr4 (1-66)||(15874526-15874591)
chr4 (1-66)||(38484473-38484538)
chr4 (2-66)||(41316198-41316261)
chr4 (1-66)||(55893469-55893534)
chr4 (3-66)||(55893226-55893289)
chr4 (10-66)||(38485175-38485231)
[»] chr8 (4 HSPs)
chr8 (1-66)||(3068786-3068851)
chr8 (1-66)||(3069072-3069137)
chr8 (1-64)||(3305633-3305696)
chr8 (1-66)||(3305917-3305982)
[»] chr3 (11 HSPs)
chr3 (1-66)||(33794446-33794511)
chr3 (1-66)||(40560757-40560822)
chr3 (1-66)||(2439782-2439847)
chr3 (1-66)||(5048302-5048367)
chr3 (1-66)||(14783747-14783812)
chr3 (1-66)||(20124667-20124732)
chr3 (1-66)||(2440068-2440133)
chr3 (1-66)||(5048016-5048081)
chr3 (1-66)||(31724365-31724430)
chr3 (10-66)||(14784027-14784084)
chr3 (12-66)||(31724657-31724711)
[»] chr5 (6 HSPs)
chr5 (3-66)||(39760436-39760499)
chr5 (1-66)||(31155640-31155705)
chr5 (1-62)||(31156191-31156252)
chr5 (1-66)||(39761612-39761677)
chr5 (1-63)||(31155908-31155970)
chr5 (18-64)||(31155384-31155430)
[»] scaffold0032 (2 HSPs)
scaffold0032 (1-66)||(33214-33279)
scaffold0032 (1-39)||(32959-32997)
[»] chr2 (6 HSPs)
chr2 (1-66)||(4731981-4732046)
chr2 (1-66)||(4731727-4731792)
chr2 (1-66)||(12414135-12414200)
chr2 (1-66)||(12426195-12426260)
chr2 (12-66)||(12413850-12413904)
chr2 (12-66)||(12425910-12425964)
[»] chr1 (10 HSPs)
chr1 (1-66)||(7710000-7710065)
chr1 (1-66)||(52331419-52331484)
chr1 (1-64)||(7709714-7709777)
chr1 (1-62)||(13618582-13618643)
chr1 (1-62)||(13618399-13618460)
chr1 (1-66)||(34492527-34492592)
chr1 (1-66)||(52331705-52331770)
chr1 (1-56)||(37646955-37647010)
chr1 (13-66)||(34492249-34492302)
chr1 (12-66)||(13618268-13618322)
[»] scaffold1408 (1 HSPs)
scaffold1408 (1-66)||(1756-1821)
[»] scaffold0428 (2 HSPs)
scaffold0428 (1-66)||(7502-7567)
scaffold0428 (1-66)||(7773-7838)
[»] scaffold0291 (2 HSPs)
scaffold0291 (1-66)||(10966-11031)
scaffold0291 (1-66)||(11353-11418)
[»] scaffold0184 (2 HSPs)
scaffold0184 (1-66)||(7030-7095)
scaffold0184 (1-62)||(7251-7312)
[»] chr6 (13 HSPs)
chr6 (1-66)||(20582648-20582713)
chr6 (1-66)||(6851261-6851326)
chr6 (1-66)||(16368898-16368963)
chr6 (1-62)||(16766558-16766619)
chr6 (1-66)||(33746724-33746789)
chr6 (2-66)||(29846978-29847042)
chr6 (1-66)||(16766301-16766366)
chr6 (1-52)||(20582906-20582957)
chr6 (1-66)||(11246349-11246414)
chr6 (1-66)||(11242304-11242369)
chr6 (13-66)||(33746961-33747014)
chr6 (12-66)||(16368653-16368707)
chr6 (12-66)||(29846801-29846855)


Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 68 - 262
Target Start/End: Complemental strand, 42810641 - 42810447
Alignment:
Q  68 tttgaattttaatgattttcgttatcctatttttggagtgaagaaaaacctattgtacatatggtataaattttttaaaaatcatggcatctgatttagc 167  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42810641 tttgaattttaatgattttcgttatcctatttttagagtgaagaaaaacctattgtacatatggtataaattttttaaaaatcatggcatctgatttagc 42810542  T
Q  168 aataagtataaccatttccagtatcaaattttcaatatatccaacgaatgaataatgtcaaaatccatacttctaaacacaatttcattcctatg 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42810541 aataagtataaccatttccagtatcaaattttcaatatatccaacgaatgaataatgtcaaaatccatacttctaaacacaatttcattcctatg 42810447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 155 - 262
Target Start/End: Complemental strand, 42768642 - 42768530
Alignment:
Q  155 catctgatttagcaataagtataaccatttcca-----gtatcaaattttcaatatatccaacgaatgaataatgtcaaaatccatacttctaaacacaa 249  Q
    ||||||||||||||||||| ||||||||||||      |||| |||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  42768642 catctgatttagcaataagcataaccatttcctttccggtataaaatttccaatatatccaacgaatgaataatatcaaaatccatatttctaaacacaa 42768543  T
Q  250 tttcattcctatg 262  Q
    ||| |||||||||    
T  42768542 tttgattcctatg 42768530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 155 - 249
Target Start/End: Complemental strand, 42817548 - 42817454
Alignment:
Q  155 catctgatttagcaataagtataaccatttccagtatcaaattttcaatatatccaacgaatgaataatgtcaaaatccatacttctaaacacaa 249  Q
    |||||||||| |||||||  |||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||| ||||    
T  42817548 catctgattttgcaataaacataaccatttcctgtatcaaatttccaatatatccaacgaatgaataatatcaaaatccatatttctaaatacaa 42817454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 37873494 - 37873429
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  37873494 tgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgc 37873429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 24825636 - 24825571
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  24825636 tgatttctgaatttttattttacaaggaccaaaacttaaacgagccatatttgcagggacgagtgc 24825571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 24825858 - 24825923
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  24825858 tgatttctgaatttttatttttcaaggaccaaaacttaaacgggccatatttgcagggacgagtgc 24825923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 32792860 - 32792795
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  32792860 tgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcaaggacgagtgc 32792795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 32793081 - 32793146
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  32793081 tgatttctgaatttttattttacaaggaccaaaacttaaacgggctatatttgcagggacgagtgc 32793146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 37879148 - 37879211
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagt 64  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  37879148 tgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagt 37879211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 11324346 - 11324407
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacga 62  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  11324346 tgatttctgaatttttattttacaaggaccaaaacttaaacgagccatatttgcagggacga 11324407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 9402627 - 9402572
Alignment:
Q  11 atttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  9402627 atttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgc 9402572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 11324119 - 11324065
Alignment:
Q  12 tttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    ||||| ||||||| |||| ||||||||| ||| ||||||||||||||||||||||    
T  11324119 ttttttttttacagggacgaaaacttaatcgggccatatttgcagggacgagtgc 11324065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 68 - 262
Target Start/End: Complemental strand, 33053359 - 33053165
Alignment:
Q  68 tttgaattttaatgattttcgttatcctatttttggagtgaagaaaaacctattgtacatatggtataaattttttaaaaatcatggcatctgatttagc 167  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33053359 tttgaattttaatgattttcgttatcctatttttagagtgaagaaaaacctattgtacatatggtataaattttttaaaaatcatggcatctgatttagc 33053260  T
Q  168 aataagtataaccatttccagtatcaaattttcaatatatccaacgaatgaataatgtcaaaatccatacttctaaacacaatttcattcctatg 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33053259 aataagtataaccatttccagtatcaaattttcaatatatccaacgaatgaataatgtcaaaatccatacttctaaacacaatttcattcctatg 33053165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 23254675 - 23254740
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23254675 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 23254740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 15874305 - 15874240
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  15874305 tgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgc 15874240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 41315976 - 41315915
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacga 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41315976 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacga 41315915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 23254454 - 23254389
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  23254454 tgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgc 23254389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 42305982 - 42305917
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  42305982 tgatttctgaatttttattttacgaggacgaaaacttaaacggaccatatttgcagggacgagtgc 42305917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 20878770 - 20878706
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtg 65  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  20878770 tgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggatgagtg 20878706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 42306202 - 42306265
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagt 64  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  42306202 tgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttggagggacgagt 42306265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 15874526 - 15874591
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    ||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||    
T  15874526 tgatttctgaatttttattttacaaagaccaaaacttaaacggggcatatttgcagggacgagtgc 15874591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 38484538 - 38484473
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||    
T  38484538 tgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagagacgagtgc 38484473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 41316198 - 41316261
Alignment:
Q  2 gatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  41316198 gatttctgaatttt-attttacaaggaccaaaacttaaacgaaccatatttgcagggacgagtgc 41316261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 55893469 - 55893534
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    ||||||||||||||||||||| ||||||||||||||||||||  |||||||| |||||||||||||    
T  55893469 tgatttctgaatttttatttttcaaggaccaaaacttaaacgagccatatttacagggacgagtgc 55893534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 55893289 - 55893226
Alignment:
Q  3 atttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    |||||||||||||||||||||||  |||||||||||||||| |||||||||||| |||| ||||    
T  55893289 atttctgaatttttattttacaataaccaaaacttaaacgggccatatttgcagagacgggtgc 55893226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 38485175 - 38485231
Alignment:
Q  10 aatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    ||||||| ||||||| |||| |||||||||||||  |||||||||||||||||||||    
T  38485175 aattttttttttacagggacgaaaacttaaacgggtcatatttgcagggacgagtgc 38485231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 3068851 - 3068786
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3068851 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 3068786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 3069072 - 3069137
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3069072 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 3069137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 3305696 - 3305633
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagt 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3305696 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagt 3305633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 3305917 - 3305982
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    |||||||| |||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||    
T  3305917 tgatttctaaatttttattttacaaggaagaaaacttaaacgggccatatttgcagggacgagtgc 3305982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 33794511 - 33794446
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33794511 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 33794446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 40560757 - 40560822
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40560757 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 40560822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 2439847 - 2439782
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  2439847 tgatttctgaatttttattttacgaggaccaaaacttaaacgggccatatttgcagggacgagtgc 2439782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 5048302 - 5048367
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  5048302 tgatttctgaatttttattttacgaggaccaaaacttaaacgggccatatttgcagggacgagtgc 5048367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 14783812 - 14783747
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  14783812 tgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacaagtgc 14783747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 20124732 - 20124667
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  20124732 tgatttctgaatttttattttacaaagaccaaaacttaaacggaccatatttacagggacgagtgc 20124667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 2440068 - 2440133
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||    
T  2440068 tgatttctgaatttttattttacaagaaccaaaacttaaacggaccatatttacaaggacgagtgc 2440133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 5048081 - 5048016
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||    
T  5048081 tgatttctgaatttttattttacaagaaccaaaacttaaacggaccatatttacaaggacgagtgc 5048016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 31724430 - 31724365
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||    
T  31724430 tgatttctgaatttttattttacaaggaccaaaatttaaacgggccatatttgcatggacgagtgc 31724365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 14784027 - 14784084
Alignment:
Q  10 aatttttatttt-acaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    |||||||||||| ||| |||| |||||||||||||  |||||||||||||||||||||    
T  14784027 aatttttatttttacagggacgaaaacttaaacgggtcatatttgcagggacgagtgc 14784084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 31724657 - 31724711
Alignment:
Q  12 tttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    |||||| |||||  |||| ||||||||||||| ||||||||||| ||||||||||    
T  31724657 tttttaatttaccgggacaaaaacttaaacgggccatatttgcaaggacgagtgc 31724711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 39760499 - 39760436
Alignment:
Q  3 atttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39760499 atttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 39760436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 31155640 - 31155705
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  31155640 tgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgc 31155705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 31156191 - 31156252
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacga 62  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  31156191 tgatttctgaatttttattttacaagaaccaaaacttaaacggaccatatttgtagggacga 31156252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 39761612 - 39761677
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||    
T  39761612 tgatttctgaatttttattttacaaggaccaaaacttaaacgtgccatatttgcagggacaagtgc 39761677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 31155970 - 31155908
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgag 63  Q
    ||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  31155970 tgatttctgaatttttattttacaaggaccaaaacttaaacgtgtcatatttgcagggacgag 31155908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 31155430 - 31155384
Alignment:
Q  18 ttttacaaggaccaaaacttaaacggaccatatttgcagggacgagt 64  Q
    |||||||||||| |||| |||||||| ||||||||||| ||||||||    
T  31155430 ttttacaaggacaaaaaattaaacgggccatatttgcatggacgagt 31155384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 33214 - 33279
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33214 tgatttctgaatttttattttacaaggaccaaaacataaacggaccatatttgcagggacgagtgc 33279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 32997 - 32959
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaa 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  32997 tgatttctgaatttttattttacaaggaccaaaacttaa 32959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 4731981 - 4732046
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4731981 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggatgagtgc 4732046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 4731792 - 4731727
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  4731792 tgatttctgaatttttattttacaaggaccaaatcttaaacgggccatatttgcagggacgagtgc 4731727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 12414135 - 12414200
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  12414135 tgatttctgaatttttattttacaaggatgaaaacttaaacggaccatatttgcagggacgagtgc 12414200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 12426195 - 12426260
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  12426195 tgatttctgaatttttattttacaaggatgaaaacttaaacggaccatatttgcagggacgagtgc 12426260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 12413904 - 12413850
Alignment:
Q  12 tttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    ||||| ||||| | |||| ||||||||||||| |||||||||||||||| |||||    
T  12413904 ttttttttttagagggacgaaaacttaaacgggccatatttgcagggacaagtgc 12413850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 12425964 - 12425910
Alignment:
Q  12 tttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    ||||| ||||| | |||| ||||||||||||| |||||||||||||||| |||||    
T  12425964 ttttttttttagagggacgaaaacttaaacgggccatatttgcagggacaagtgc 12425910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 7710000 - 7710065
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7710000 tgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgc 7710065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 52331484 - 52331419
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  52331484 tgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgc 52331419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 7709777 - 7709714
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagt 64  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7709777 tgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagt 7709714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 13618582 - 13618643
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacga 62  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13618582 tgatttctgattttttattttacaaggaccaaaacttaaacggaccatatttgcagggacga 13618643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 13618399 - 13618460
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacga 62  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13618399 tgatttctgattttttattttacaaggaccaaaacttaaacgggccatatttgcagggacga 13618460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 34492527 - 34492592
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  34492527 tgatgtctgaatttttattttacaaggaccaaaacttaaacagaccatatttgcaggaacgagtgc 34492592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 52331705 - 52331770
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    |||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  52331705 tgatttctaaatttttattttacaaggatcaaaacttaaacgggccatatttgcagggacgagtgc 52331770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 37646955 - 37647010
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcag 56  Q
    |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||    
T  37646955 tgatttttgaatttttattttacaaggaccaaaacttaaacgagccatatttgcag 37647010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 34492302 - 34492249
Alignment:
Q  13 ttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    |||| ||||||| |||| ||||||||||||| ||||||||||||||||||||||    
T  34492302 tttttttttacacggacgaaaacttaaacgggccatatttgcagggacgagtgc 34492249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 13618322 - 13618268
Alignment:
Q  12 tttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    ||||| ||||||| |||| |||||||||||||  |||||||||||||| ||||||    
T  13618322 ttttttttttacagggactaaaacttaaacgggtcatatttgcagggaagagtgc 13618268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 1821 - 1756
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  1821 tgatttctgaatttttattttagaaggaccaaaacttaaacgggccatatttgcagggacgagtgc 1756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 7567 - 7502
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  7567 tgatttctgaatttttattttagaaggaccaaaacttaaacgggccatatttgcagggacgagtgc 7502  T

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Target: scaffold0428; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 7773 - 7838
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  7773 tgatttctgaatttttattttacaaggaccaaaacttaaacgtgccatatttgcagggacgagtgc 7838  T

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Target: scaffold0291 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 11031 - 10966
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  11031 tgatttctgaatttttattttacaaggaccaaaatttaaacgggccatatttgcagggacgagtgc 10966  T

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Target: scaffold0291; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 11353 - 11418
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  11353 tgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgc 11418  T

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Target: scaffold0184 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 7095 - 7030
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  7095 tgatttctgaatttttattttataaggaccaaaacttaaacggaccatatttgcaggaacgagtgc 7030  T

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Target: scaffold0184; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 7251 - 7312
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacga 62  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7251 tgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacga 7312  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 20582713 - 20582648
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  20582713 tgatttctgaatttttattttacaaggaccaaaacttaaacggactatatttgtagggacgagtgc 20582648  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 6851326 - 6851261
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||    
T  6851326 tgatttctgaatttttattttacaaagaccaaaacttaaacggatcatatttgcatggacgagtgc 6851261  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 16368898 - 16368963
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    ||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  16368898 tgatttctgaattttcattttacacggaccaaaacttaaacggatcatatttgcagggacgagtgc 16368963  T

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Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 16766558 - 16766619
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacga 62  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  16766558 tgatttctgaatttttattttacaaggaccaaaacataaacgggccatatttgcagggacga 16766619  T

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Target: chr6; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 33746789 - 33746724
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    |||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||    
T  33746789 tgatttctgaatttttattttacatggacgaaaacttaaacgggccatatttgcagggacgagtgc 33746724  T

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Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 29846978 - 29847042
Alignment:
Q  2 gatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    |||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||    
T  29846978 gatttctgaatttttattttacagagaccaaaacttaaacgggccatatttgcagggacgagtgc 29847042  T

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Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 16766366 - 16766301
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    ||||||||||||||||||||||||| |||||||||||||| ||  |||||||||||||||||||||    
T  16766366 tgatttctgaatttttattttacaaagaccaaaacttaaatgggtcatatttgcagggacgagtgc 16766301  T

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Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 20582906 - 20582957
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatattt 52  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  20582906 tgatttctaaatttttattttacaaggaccaaaacttaaacgggccatattt 20582957  T

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Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 11246349 - 11246414
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    |||||| ||||||||||||||||||||||  |||||||||| || |||||||||||||| ||||||    
T  11246349 tgatttgtgaatttttattttacaaggactcaaacttaaacagatcatatttgcagggatgagtgc 11246414  T

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Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 11242369 - 11242304
Alignment:
Q  1 tgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    |||||||||||||||||||||||||||| ||||||||||| |  ||||||||   |||||||||||    
T  11242369 tgatttctgaatttttattttacaaggatcaaaacttaaatgagccatatttatggggacgagtgc 11242304  T

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Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 33746961 - 33747014
Alignment:
Q  13 ttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    |||| |||||||||||| ||||||||||||| ||||||||||||||||| ||||    
T  33746961 tttttttttacaaggacgaaaacttaaacgggccatatttgcagggacgggtgc 33747014  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 16368707 - 16368653
Alignment:
Q  12 tttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    ||||| ||||||| |||| |||||||||||   ||||||||||||||||||||||    
T  16368707 ttttttttttacagggacgaaaacttaaacatgccatatttgcagggacgagtgc 16368653  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 29846855 - 29846801
Alignment:
Q  12 tttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgc 66  Q
    ||||| ||||||| |||| |||||||||| |  ||||||||||||||||||||||    
T  29846855 ttttttttttacagggacgaaaacttaaatgacccatatttgcagggacgagtgc 29846801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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