View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21148_high_8 (Length: 238)
Name: NF21148_high_8
Description: NF21148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21148_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 7e-73; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 10594688 - 10594469
Alignment:
| Q |
4 |
aatggttaacatatacaaatggtgaacctactacacttcggtatcacaccaaaggtacacatatctggtggacaatgagcatcattaaaacatctacgaa |
103 |
Q |
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| T |
10594688 |
aatggttaacatatacaaatggtgaacctactacacttcggtatcacaccaagggtacacatatctggtggacaatgagcatcattaaaacatctacgaa |
10594589 |
T |
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| Q |
104 |
tctctgtaatgaaaaaggagaagaaaatagtgtaactaaaatggaataatatatttgtt---atnnnnnnnnggcaattt-aacaactagcttactttca |
199 |
Q |
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| T |
10594588 |
tctctgtaatgaaaa---agaagaaaagagtgtaactaaaatggaataatatatttgttaaaaaaaaaaaaaggtaatttaaaaaactggcttactttca |
10594492 |
T |
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| Q |
200 |
gcatttgttgctacgtcaagaat |
222 |
Q |
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| T |
10594491 |
gcatttgttgctacgtcaagaat |
10594469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 10513640 - 10513422
Alignment:
| Q |
4 |
aatggttaacatatacaaatggtgaacctactacacttcggtatcacaccaaaggtacacatatctggtggacaatgagcatcattaaaacatctacgaa |
103 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10513640 |
aatggttaacatatacaaatggtgaaccttc---acttcggtatcacaccaagggtacacatatctggtggacaatgagcatcattaaaacatgtacgaa |
10513544 |
T |
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| Q |
104 |
tctctgtaatgaaaaaggagaagaaaatagtgtaactaaaatggaataatatatttgtt---atnnnnnnnnggcaatttaacaactagcttactttcag |
200 |
Q |
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| T |
10513543 |
tctctgtaatgaaaaaggagaagaaaagagtgtaactaaaatggaataatatatttgttacaaaaaaaaaaaggtaatttaaaaactggcttactttcag |
10513444 |
T |
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| Q |
201 |
catttgttgctacgtcaagaat |
222 |
Q |
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||| |||||||||||||||||| |
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| T |
10513443 |
catatgttgctacgtcaagaat |
10513422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 4 - 157
Target Start/End: Complemental strand, 10510473 - 10510323
Alignment:
| Q |
4 |
aatggttaacatatacaaatggtgaacctactacacttcggtatcacaccaaaggtacacatatctggtggacaatgagcatcattaaaacatctacgaa |
103 |
Q |
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|||||||||||| |||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10510473 |
aatggttaacatttacaaatggtgaacttac---acttcggtatcacaccaggggtacacatatctggtggacaatgagcatcattaaaacatctacgaa |
10510377 |
T |
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| Q |
104 |
tctctgtaatgaaaaaggagaagaaaatagtgtaactaaaatggaataatatat |
157 |
Q |
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| T |
10510376 |
tctctgtaatgaaaaaggagaagagaagagtgtaactaacatggaataatatat |
10510323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 10658181 - 10658128
Alignment:
| Q |
4 |
aatggttaacatatacaaatggtgaacctactacacttcggtatcacaccaaaggta |
60 |
Q |
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|||||||||||| ||||||||| |||||||| |||||||||||||||||| |||| |
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| T |
10658181 |
aatggttaacatttacaaatggggaacctac---acttcggtatcacaccaagggta |
10658128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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