View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21148_low_1 (Length: 487)

Name: NF21148_low_1
Description: NF21148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21148_low_1
NF21148_low_1
[»] chr7 (3 HSPs)
chr7 (20-143)||(5519710-5519836)
chr7 (183-274)||(5519579-5519670)
chr7 (384-444)||(5519500-5519560)
[»] chr8 (1 HSPs)
chr8 (372-426)||(24391280-24391334)
[»] chr2 (1 HSPs)
chr2 (381-419)||(16069637-16069675)
[»] chr3 (1 HSPs)
chr3 (369-418)||(35223298-35223347)


Alignment Details
Target: chr7 (Bit Score: 85; Significance: 3e-40; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 5519836 - 5519710
Alignment:
Q  20 ggaaaaccatcccataggccacccatcaataatcaccaacctaataatccatagtgtataatatt---atttcaggttcacattcaattttgtactaagt 116  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||     |||| | ||| |||||||||||||| ||||    
T  5519836 ggaaaaccatcccataggccacccatcaataaccaccaacctaataatccatagtgtataatatttcaggttcatgatcatattcaattttgtaccaagt 5519737  T
Q  117 tgctagcaacttatagtaatcacctag 143  Q
    |||||||||||||||||||||||||||    
T  5519736 tgctagcaacttatagtaatcacctag 5519710  T

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Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 183 - 274
Target Start/End: Complemental strand, 5519670 - 5519579
Alignment:
Q  183 tttcttttttcatgtaccaaaaagtttgtttgtttgtttcaaaatattaaaaagagatatatgtagactgcatgcgttttcagtattgttta 274  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5519670 tttcttttttcatgtgccaaaaagtttgtttgtttgtttccaaatattaaaaagagatatatgtagactgcatgcattttcagtattgttta 5519579  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 384 - 444
Target Start/End: Complemental strand, 5519560 - 5519500
Alignment:
Q  384 ccaataacagaagattaatgtaaatgaaagtaaaaaataatggttacaatcaatctttgtt 444  Q
    |||||||||||||||||||||||||||||||| || |||||||  || ||| |||||||||    
T  5519560 ccaataacagaagattaatgtaaatgaaagtataagataatggacacgatcgatctttgtt 5519500  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 426
Target Start/End: Original strand, 24391280 - 24391334
Alignment:
Q  372 ttagaacaacaaccaataacagaagattaatgtaaatgaaagtaaaaaataatgg 426  Q
    |||||||| |||| | || ||||||||||| |||||||||||||||||| |||||    
T  24391280 ttagaacagcaactagtagcagaagattaaagtaaatgaaagtaaaaaacaatgg 24391334  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 419
Target Start/End: Complemental strand, 16069675 - 16069637
Alignment:
Q  381 caaccaataacagaagattaatgtaaatgaaagtaaaaa 419  Q
    ||||||||||||||||||||| ||||| |||||||||||    
T  16069675 caaccaataacagaagattaaggtaaacgaaagtaaaaa 16069637  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 418
Target Start/End: Original strand, 35223298 - 35223347
Alignment:
Q  369 ttgttagaacaacaaccaataacagaagattaatgtaaatgaaagtaaaa 418  Q
    ||||||||||||||||||  ||||||||||||| |||||  |||||||||    
T  35223298 ttgttagaacaacaaccagcaacagaagattaaagtaaacaaaagtaaaa 35223347  T

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