View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21148_low_11 (Length: 228)
Name: NF21148_low_11
Description: NF21148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21148_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 9467381 - 9467561
Alignment:
| Q |
18 |
cctatgtcaaaatttgttcctgaccatgtcaataagagacggttgtcttgaatgctatatgcagaaaatggagaaacacggtcaaacattttggtgcagt |
117 |
Q |
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| T |
9467381 |
cctatgtcaaaatttgttcctgaccatgtcaataagagacggttgtcttgaatgctatatgcagaaaatggagaaacacggtcaaacagtttggtgcagt |
9467480 |
T |
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| Q |
118 |
atactaatacgtcagattcaacgatagcttcttgatctgaatcaacgacataaattgggcaagatatgatgtcttgtgttc |
198 |
Q |
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| T |
9467481 |
atactaatacgtcagattcaacgatagtttcttgatctgaatcaacgacataaattgggcaagatatgatgtcttgtgttc |
9467561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 9258158 - 9258330
Alignment:
| Q |
18 |
cctatgtcaaaatttgttcctgaccatgtcaataagagacggttgtcttgaatgctatatgcagaaaatggagaaacacggtcaaacattttggtgcagt |
117 |
Q |
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| T |
9258158 |
cctatgtcaaaatttgttcccgaccatgtcaacgagagacggttgtattgaatagtagatgcatcaaatgaggaaacgtgatcaaacaatttgatgcagt |
9258257 |
T |
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| Q |
118 |
atactaatacgtcagattcaacgatagcttcttgatctgaatcaacgacataaattgggcaagatatgatgtcttg |
193 |
Q |
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| T |
9258258 |
atactaa---gtcagattcaacgatattttcaaggtctgaatcggcgacataaattggacaagatatcatatcttg |
9258330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 9170952 - 9170848
Alignment:
| Q |
20 |
tatgtcaaaatttgttcctgaccatgtcaataagagacggttgtcttgaatgctatatgcagaaaatggagaaacacggtcaaacattttggtgcagtat |
119 |
Q |
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|||||||||||||||||| |||||||||| |||| |||||| ||||||| || | ||||| ||| ||||| ||||||| ||| |||| |||||||| |
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| T |
9170952 |
tatgtcaaaatttgttccagaccatgtcatcgggagatggttgtattgaatgttaaacgcagagaatagagaactacggtcagacagtttgatgcagtat |
9170853 |
T |
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| Q |
120 |
actaa |
124 |
Q |
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||||| |
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| T |
9170852 |
actaa |
9170848 |
T |
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