View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21148_low_4 (Length: 425)
Name: NF21148_low_4
Description: NF21148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21148_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 10 - 361
Target Start/End: Complemental strand, 48258541 - 48258192
Alignment:
| Q |
10 |
ttttacagaataattcccatccttgaaaaacatacacataaacttatcttcaatttgctctaggattagagaacgttgcttgatttgactgctctcatta |
109 |
Q |
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| T |
48258541 |
ttttacagaataattcccatccttgaaaaacatacacataaacttatcttcaatttgctcttggattagagaacgttgcttgatttgactgctctcatta |
48258442 |
T |
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| Q |
110 |
ctatgaaaaatagtgtcaatcaaggttttattccaagttttgggttaagactttaaacccattatcaacatggggaaagtatattaccttgagtcattta |
209 |
Q |
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| T |
48258441 |
ctatgaaaaatagtgtcaaacaaggttttattccaagttttgggttaagactttaaacccattatcaacatggggaaagtatattaccttgagtcattta |
48258342 |
T |
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| Q |
210 |
gcaagcatagtaataggctcagtgtgaagcctccaaaattgcttagccaagaatgcttcaatgaagctccttatgtttctgaacccaagtccaccatcat |
309 |
Q |
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| T |
48258341 |
gcaagcatagtaataggctcagtgtgaagcctccaaaattgcttagccaagaatgcttcaatgaagctccttatgtttctgaacccaagtccaccatcat |
48258242 |
T |
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| Q |
310 |
atatatacttggacctaaacaaattatcttatttcctccgatgaattttcct |
361 |
Q |
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| T |
48258241 |
a--tatacttggacctaaacaaattatcttatttcctccgatgaattttcct |
48258192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 357 - 425
Target Start/End: Original strand, 48258090 - 48258158
Alignment:
| Q |
357 |
ttcctacctatgttataagttgctttttgattcctcgagggaatttgtgatagaattaaacaatctata |
425 |
Q |
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| T |
48258090 |
ttcctacctatgttataagttgctttttgattcctcgagggaatttgtgatagaattaaacaatctata |
48258158 |
T |
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