View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21148_low_6 (Length: 321)
Name: NF21148_low_6
Description: NF21148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21148_low_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 178 - 300
Target Start/End: Complemental strand, 1995604 - 1995482
Alignment:
| Q |
178 |
aagtaaaatctcgtaactatatcacttactcaatcggctgagatcgttcaactgtatgactgcgtccttctcatcggtctcgtatcgcggatcaaagtaa |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1995604 |
aagtaaaatctcgtaactatatcacttactcaatcggctgagatcgttcaactgtgtgactgcgtccttctcataggtctcgtatcgcggatcaaagtaa |
1995505 |
T |
|
| Q |
278 |
acacaaaattattttccttacca |
300 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
1995504 |
acacaaaattattttccttacca |
1995482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 123 - 195
Target Start/End: Complemental strand, 1995690 - 1995618
Alignment:
| Q |
123 |
attcagaaatctaaccttaataaaatagtcaatataaatcaaatccaaacttgtcaagtaaaatctcgtaact |
195 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1995690 |
attcagaaatctaacgttaataaaatagtcaatataaatcaaatccaaacttgtcaagtaaaatctcgtaact |
1995618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 1995812 - 1995756
Alignment:
| Q |
1 |
ttgaattttgaagaaatgtgtgttctataaagtcatcctaatttgtgtaacactatt |
57 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1995812 |
ttgaattttgaagaaatgtgtgttctataaagtcatcctaatttgtgtaacactatt |
1995756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University