View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21148_low_8 (Length: 296)
Name: NF21148_low_8
Description: NF21148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21148_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 36948302 - 36948024
Alignment:
| Q |
1 |
tttgccaaccaagtaagttcactgataacagtgtagagaccagccatgaaagccaaagacagtgagatgagagagattccaagaattggcattacgatat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||| || || | |
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| T |
36948302 |
tttgccaaccaagtaagttcactgataacagtgtagaggccagcaatgaaagccaaagacagtgagatgagagcgattccaagaattggcataacaattt |
36948203 |
T |
|
| Q |
101 |
cgagggagtaaaacaccaatctagttaatccaaatgttgcccaaaagagtatgataatagaactaatggaactgaacaatgatattgtgatgaagataat |
200 |
Q |
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|| ||| | ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36948202 |
tcagagagaatttcaccaattcagttaatccaagtgttgcccaaaagagtatgataatagaactaatggaactgaataatgatattgtgatgaagataat |
36948103 |
T |
|
| Q |
201 |
gaatgcttgaaacattgcatgatataggttgtttgcttttccatctgcttcacctggaacagcaaaacatgctgctact |
279 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36948102 |
gaatgcttgaaacattgcatgacataggttgtttgcttttccatctgcttcacctggaacagcaaaacatgctgctact |
36948024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 4 - 279
Target Start/End: Original strand, 37069660 - 37069935
Alignment:
| Q |
4 |
gccaaccaagtaagttcactgataacagtgtagagaccagccatgaaagccaaagacagtgagatgagagagattccaagaattggcattacgatatcga |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || || ||||||| | ||||||||| ||||| ||||| | | |
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| T |
37069660 |
gccaaccaagtaagttcactgataacagtgtagagaccagtcatgaaagccaaagatagagaaatgagagcggttccaagaagtggcaacacgattttca |
37069759 |
T |
|
| Q |
104 |
gggagtaaaacaccaatctagttaatccaaatgttgcccaaaagagtatgataatagaactaatggaactgaacaatgatattgtgatgaagataatgaa |
203 |
Q |
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| T |
37069760 |
gtgagaaagtcaccaattcagttaatccaagttttgccaaaaagagtatgatagtagaactaatggaactgaacaatgatattgtgatgaagataatgaa |
37069859 |
T |
|
| Q |
204 |
tgcttgaaacattgcatgatataggttgtttgcttttccatctgcttcacctggaacagcaaaacatgctgctact |
279 |
Q |
| |
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||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37069860 |
agcttggaacattgcatgacataggttgtttgcttttccatccgcttcacctggaacagcaaaacatgctgctact |
37069935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 37079417 - 37079695
Alignment:
| Q |
1 |
tttgccaaccaagtaagttcactgataacagtgtagagaccagccatgaaagccaaagacagtgagatgagagagattccaagaattggcattacgatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||| ||||| ||||||||||| |||||| || || | |
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| T |
37079417 |
tttgccaaccaagtaagttcactgataacagtgtagagtccagccataaaagccaaagatagtgagacgagagcgattccaagaagtggcatcacaattt |
37079516 |
T |
|
| Q |
101 |
cgagggagtaaaacaccaatctagttaatccaaatgttgcccaaaagagtatgataatagaactaatggaactgaacaatgatattgtgatgaagataat |
200 |
Q |
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| T |
37079517 |
tcagagagaaagtcaccaattcaggtattccaagctttgcccaaaagagtatgatagtagaactaatggaactgaacaatgatattgtgatgaatataat |
37079616 |
T |
|
| Q |
201 |
gaatgcttgaaacattgcatgatataggttgtttgcttttccatctgcttcacctggaacagcaaaacatgctgctact |
279 |
Q |
| |
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||| | || |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37079617 |
gaaaacatggaacattgcatgacataggttgtttgcttttccatccgcttcacctggaacagcaaaacatgctgctact |
37079695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 36956378 - 36956100
Alignment:
| Q |
1 |
tttgccaaccaagtaagttcactgataacagtgtagagaccagccatgaaagccaaagacagtgagatgagagagattccaagaattggcattacgatat |
100 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||| |||||||| |||||||| ||||| | ||| ||||||| ||||||||||| |||| || || | |
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| T |
36956378 |
tttgccaaccaattaagttcactaataacagtgtacagaccagcaatgaaagcaaaagataatgaaatgagagcgattccaagaagcggcacaacaattt |
36956279 |
T |
|
| Q |
101 |
cgagggagtaaaac--accaatctagttaatccaaatgttgcccaaaagagtatgataatagaactaatggaactgaacaatgatattgtgatgaagata |
198 |
Q |
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||| ||||||| |||||| ||||||||||| ||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||| |
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| T |
36956278 |
tgag--agtaaaagttaccaattcagttaatccaagtgttgcccaaaagagtatgatggtagcactaattgaactgaacaatgatattgtgatgaagata |
36956181 |
T |
|
| Q |
199 |
atgaatgcttgaaacattgcatgatataggttgtttgcttttccatctgcttcacctggaacagcaaaacatgctgctact |
279 |
Q |
| |
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||||| | || |||||||||||| |||| |||| ||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
36956180 |
atgaaaacatggaacattgcatgacatagattgtgtgcttttccttctgcttcacctggaacagctaaacatgctgctact |
36956100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 279
Target Start/End: Complemental strand, 36935509 - 36935246
Alignment:
| Q |
16 |
agttcactgataacagtgtagagaccagccatgaaagccaaagacagtgagatgagagagattccaagaattggcattacgatatcgagggagtaaaa-c |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | || || |||| ||||||||||| ||||| ||||| | ||| | ||||| | |
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| T |
36935509 |
agttcactgataacagtgtagagaccagccatgaaagccaaagataatgcaataagagcgattccaagaagcggcataacgattttgagag-gtaaagtc |
36935411 |
T |
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| Q |
115 |
accaatctagttaatccaaatgttgcccaaaagagtatgataatagaactaatggaactgaacaatgatattgtgatgaagataatgaatgcttgaaaca |
214 |
Q |
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| |||| |||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||| || ||||||| |
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| T |
36935410 |
agcaattcagttaacccaaatgttgcccaaaagagtatgatggtagcactaatggaactgaacaatgatactgtgatgaagataatgaaagcatgaaaca |
36935311 |
T |
|
| Q |
215 |
ttgcatgatataggttgtttgcttttccatctgcttcacctggaacagcaaaacatgctgctact |
279 |
Q |
| |
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||| |||| |||| |||| ||||||||| |||||||||| |||||| || ||||||||||||||| |
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| T |
36935310 |
ttgtatgacatagattgtgtgcttttccttctgcttcacatggaacggctaaacatgctgctact |
36935246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 12493446 - 12493724
Alignment:
| Q |
1 |
tttgccaaccaagtaagttcactgataacagtgtagagaccagccatgaaagccaaagacagtgagatgagagagattccaagaattggcattacgatat |
100 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||| |||| |||||||||||||||||| | || ||||||| ||||||||||| ||||| || || | |
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| T |
12493446 |
tttgacaaccaagtaagttcactaataacagtgtaaagactagccatgaaagccaaagataacgaaatgagagcgattccaagaagcggcatgaccattt |
12493545 |
T |
|
| Q |
101 |
cgagggagtaaaac--accaatctagttaatccaaatgttgcccaaaagagtatgataatagaactaatggaactgaacaatgatattgtgatgaagata |
198 |
Q |
| |
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||| ||||||| |||||| |||||| |||| |||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||| |
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| T |
12493546 |
tgag--agtaaaagttaccaattcagttaacccaagtgttgcccaaaagagtatgatagtagcactaatggaactgaacaacgatattgtgatgaagata |
12493643 |
T |
|
| Q |
199 |
atgaatgcttgaaacattgcatgatataggttgtttgcttttccatctgcttcacctggaacagcaaaacatgctgctact |
279 |
Q |
| |
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||||| || || |||||||||||| ||||| ||| ||||||||| |||||||||||||||||||| ||||||||||||||| |
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|
| T |
12493644 |
atgaaagcatggaacattgcatgacataggctgtgtgcttttccttctgcttcacctggaacagctaaacatgctgctact |
12493724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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