View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21149_high_1 (Length: 913)
Name: NF21149_high_1
Description: NF21149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21149_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 814; Significance: 0; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 814; E-Value: 0
Query Start/End: Original strand, 11 - 894
Target Start/End: Complemental strand, 29279986 - 29279102
Alignment:
| Q |
11 |
gtgagatgaatgcaattgccaaaatgtctttttatctgaagacattttggttgatgatattacaatataaggataaataaaaccaatagttgtcgatata |
110 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29279986 |
gtgatatgaatgcaattgccaaaatggctttttatctgaagacattttggttgatgatattacaatataaggataaataaaaccaatagttgtcgatata |
29279887 |
T |
|
| Q |
111 |
atatggtttaagtatagaatagcaaatttataaacnnnnnnnnn-agaagcaaatttataaacttcaaatttattgttctgatacgtcaaaatgtattac |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29279886 |
atatggtttaagtatagaatagcaaatttataaacttttttttttagaagcaaatttataaacttcaaatttattgttctgatacgtcaaaatgtattac |
29279787 |
T |
|
| Q |
210 |
ataaatcaaatacagctaaagcataagaaatgccaagctgtatcaaaacagatcatagtttgatacagagaaaagtacaaggtagtctccaagaccttta |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29279786 |
ataaatcaaatacagctaaagcataagaaatgccaagctgtatcaaaacagatcatagtttgatacagagaaaggtacaaggtagtctccaagaccttta |
29279687 |
T |
|
| Q |
310 |
atgcaaaacatggataagaagcactactccacctccatgacaatcacaatcagatcagaatactttgtatgcatggaaacaacagacacgagtgaaagtg |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29279686 |
atgcaaaacatggataagaagcactactccacctccatgacaatcacaatcagatcagaatactttgtatgcatggaaacaacagacacgagtgaaagtg |
29279587 |
T |
|
| Q |
410 |
atgaaccaaacttagcaagcattgttatcgtctactaatgcatacaaaaggattcactagagttatgacattgttatcgtatactaatgcaagccaacca |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29279586 |
atgaaccaaacttagcaagcattgttatcgtctactaatgcatacaaaaggattcactagagttatgacattgttatcgtctactaatgcaagccaacca |
29279487 |
T |
|
| Q |
510 |
tggctacaaccggccaaacacattttactttcaatgatggaaggatgggataattgaatagggtactctttctcacttagaatactatacaacgatctct |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29279486 |
tggctacaaccggccaaacacattttactttcaatgatggaaggatgggataattgaatagggtactctttctcacttagaatactatacaacgatctct |
29279387 |
T |
|
| Q |
610 |
tcttcatctgtgatattgtgtgtatacgataatattggtctgagaggatcatcaacataggtggtacattaatcctaaattgatgatttttatggttaag |
709 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29279386 |
tcttcgtctgtgatattgtgtgtatacaataatattggtctgagaggatcatcaacataggtggtacattaatcctaaattgatgatttttatggttaag |
29279287 |
T |
|
| Q |
710 |
cgttgcaactgaaaactaattcttacacaccacaccaaacctaacatgatctatgtgttcttccaacttatcaagaacaaaactaagaggatatgcttct |
809 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29279286 |
cgttgcaactgaaaaccaattcttacacaccacaccaaacctaacatgatctatgtgttcttccaacttatcaagaacaaaactaagaggatatgcttct |
29279187 |
T |
|
| Q |
810 |
aaattttcccaatcaaccttcctcattgctaagtaaaactaacaggtgaaataattgaagggagtgtttggaggaacgttactcc |
894 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
29279186 |
aaattttcccaatcaaccttcctcattgataagtaaaactaacaggtgaaataattaaagggagtgtttggaggaacgttactcc |
29279102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 455 - 847
Target Start/End: Complemental strand, 29270138 - 29269749
Alignment:
| Q |
455 |
aaaaggattcactagagttatgacattgttatcgtatactaatgcaagccaaccatggctacaaccggccaaacacattttactttcaatgatggaagga |
554 |
Q |
| |
|
|||||||||||||||||||||| ||||||| | | |||| |||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| |
|
|
| T |
29270138 |
aaaaggattcactagagttatggcattgtttttatccactagtgcaagccaaccatggctacaacct---aaacatgttttacttttaatgatggaagga |
29270042 |
T |
|
| Q |
555 |
tgggataattgaatagggtactctttctcacttagaatactatacaacgatctcttcttcatctgtgatattgtgtgtatacgataatattggtctgaga |
654 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||| | |||||||| || ||| || |||| ||| |||| ||| || ||||| | ||| || ||||| |
|
|
| T |
29270041 |
tgggataactgaatagggtactctttcgcacttgggatactatataatgatttcatctttctctttgattttgcacgtttacgagacaatttgtttgaga |
29269942 |
T |
|
| Q |
655 |
ggatcatcaacataggtggtacattaatcctaaattgatgatttttatggttaagcgttgcaactgaaaactaattcttacacaccacaccaaacctaac |
754 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||| | || |||| |||||||||||||||||||| |
|
|
| T |
29269941 |
ggatcattaacataggtggtacatcaatcctaaattgatgatttttatggttaagctttgcaattgataggcaactcttgcacaccacaccaaacctaac |
29269842 |
T |
|
| Q |
755 |
atgatctatgtgttcttccaacttatcaagaacaaaactaagaggatatgcttctaaattttcccaatcaaccttcctcattgctaagtaaaa |
847 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||| || ||||||||| |||||| ||||| |||||||| |||||||| |
|
|
| T |
29269841 |
atgatctatgtgttcttccaactcgtcaagaaccaaactaagagggtagcaatctaaatttgaccaatctacctttctcattgccaagtaaaa |
29269749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 455 - 845
Target Start/End: Complemental strand, 29282514 - 29282130
Alignment:
| Q |
455 |
aaaaggattcactagagttatgacattgttatcgtatactaatgcaagccaaccatggctacaaccggccaaacacattttactttcaatgatggaagga |
554 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| | || ||||||||||||||||||||||| || ||||||| ||| || | ||||||||||| |
|
|
| T |
29282514 |
aaaaggattcactagagttatggcattgttatcatccaccaatgcaagccaaccatggctacagcct---aaacacaatttcattgtattgatggaagga |
29282418 |
T |
|
| Q |
555 |
tgggataattgaatagggtactctttctcacttagaatactatacaacgatctcttcttcatctgtgatattgtgtgtatacgataatattggtctgaga |
654 |
Q |
| |
|
||||| |||||||||||||| ||||||| |||||| ||| ||||||| ||| ||||||| |||||||||||| |||||||| | ||| | ||||| |
|
|
| T |
29282417 |
tgggagaattgaatagggtagtctttcttacttaggatattatacaatgatatcttctttgtctgtgatattgcatgtatacgcgacaatttttttgaga |
29282318 |
T |
|
| Q |
655 |
ggatcatcaacataggtggtacattaatcctaaattgatgatttttatggttaagcgttgcaactgaaaactaattcttacacaccacaccaaacctaac |
754 |
Q |
| |
|
||||||||| |||||| ||||||| |||||||||||||||||||||||||||| | ||| |||| | | ||||||||||||| ||||| |||||||| |
|
|
| T |
29282317 |
ggatcatcagcataggcagtacatt---cctaaattgatgatttttatggttaagcttagcagctgatagccaattcttacacacaacaccgaacctaac |
29282221 |
T |
|
| Q |
755 |
atgatctatgtgttcttccaacttatcaagaacaaaactaagaggatatgcttctaaattttcccaatcaaccttcctcattgctaagtaa |
845 |
Q |
| |
|
|| ||| | ||| |||||||||| |||||||| |||||||||||| | | | ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
29282220 |
atagtctgtttgtacttccaacttttcaagaaccaaactaagaggaagttcatttaaatttgcccaatcaaccttcctcattgctaagtaa |
29282130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 730 - 877
Target Start/End: Complemental strand, 29275433 - 29275283
Alignment:
| Q |
730 |
tcttacacaccacaccaaacctaacatgatctatgtgttcttccaacttatcaagaacaaaactaagaggatatgcttctaaattttcccaatcaacctt |
829 |
Q |
| |
|
|||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| | | |||||||||||||||||||||||| |
|
|
| T |
29275433 |
tcttgcacactacacgaaacctaacatgatctatgtgttcttccaacttatcaagaaccaaactaagaggagaggattctaaattttcccaatcaacctt |
29275334 |
T |
|
| Q |
830 |
cctcattgc---taagtaaaactaacaggtgaaataattgaagggagtgtt |
877 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
29275333 |
cctcattgctgataagtaaaactaaccggtgaaataattgaagggagtgtt |
29275283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 651 - 842
Target Start/End: Complemental strand, 29287778 - 29287587
Alignment:
| Q |
651 |
gagaggatcatcaacataggtggtacattaatcctaaattgatgatttttatggttaagcgttgcaactgaaaactaattcttacacaccacaccaaacc |
750 |
Q |
| |
|
||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||| | |||| ||| | | |||||||||||||||||||||||| |
|
|
| T |
29287778 |
gagaggatcataagcataggtagtacattaatcctaaattgatgatttttatggttaagcttagcaattgatagccaattcttacacaccacaccaaacc |
29287679 |
T |
|
| Q |
751 |
taacatgatctatgtgttcttccaacttatcaagaacaaaactaagaggatatgcttctaaattttcccaatcaaccttcctcattgctaag |
842 |
Q |
| |
|
|||||| ||| | ||| |||||||||| |||||||| |||||||||||| | || |||||||| ||||||| || ||| ||||||||||| |
|
|
| T |
29287678 |
taacatagtctgtttgtacttccaacttttcaagaaccaaactaagaggaagtcctcctaaatttgcccaatctacattcgtcattgctaag |
29287587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 647 - 792
Target Start/End: Original strand, 28612896 - 28613041
Alignment:
| Q |
647 |
gtctgagaggatcatcaacataggtggtacattaatcctaaattgatgatttttatggttaagcgttgcaactgaaaactaattcttacacaccacacca |
746 |
Q |
| |
|
||||||||||||||| | ||| ||||||| |||| ||||||||||||| ||| |||||||||| |||||||||| | | || |||| ||||| ||| || |
|
|
| T |
28612896 |
gtctgagaggatcatgagcatgggtggtatattactcctaaattgatggctttgatggttaagctttgcaactgatagccaagtcttgcacacgacagca |
28612995 |
T |
|
| Q |
747 |
aacctaacatgatctatgtgttcttccaacttatcaagaacaaaac |
792 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
28612996 |
aacctaacatgatctatgtgttcttccaacttgtcaagaaccaaac |
28613041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 643 - 800
Target Start/End: Complemental strand, 28621408 - 28621251
Alignment:
| Q |
643 |
attggtctgagaggatcatcaacataggtggtacattaatcctaaattgatgatttttatggttaagcgttgcaactgaaaactaattcttacacaccac |
742 |
Q |
| |
|
|||| |||| ||||||||| | ||| ||||||| |||||| |||||||||||||||| |||||| | | ||||||||||| | |||| || ||||| || |
|
|
| T |
28621408 |
attgttctgggaggatcatgagcatgggtggtatattaatgctaaattgatgattttgatggttcaactttgcaactgaacgccaatttttgcacacgac |
28621309 |
T |
|
| Q |
743 |
accaaacctaacatgatctatgtgttcttccaacttatcaagaacaaaactaagagga |
800 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| || |||||||| |||||||||||| |
|
|
| T |
28621308 |
accaaacctaacatgatcgatgtgttcttccaatttgtcaagaaccaaactaagagga |
28621251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 455 - 582
Target Start/End: Complemental strand, 29287965 - 29287841
Alignment:
| Q |
455 |
aaaaggattcactagagttatgacattgttatcgtatactaatgcaagccaaccatggctacaaccggccaaacacattttactttcaatgatggaagga |
554 |
Q |
| |
|
||||||||||||||||||||| ||||||||| | |||| ||||||||||||||||||||||| ||||||| ||||||| | ||||||||||||| |
|
|
| T |
29287965 |
aaaaggattcactagagttatagcattgttattatccactagtgcaagccaaccatggctacaac---ccaaacatgttttactcttaatgatggaagga |
29287869 |
T |
|
| Q |
555 |
tgggataattgaatagggtactctttct |
582 |
Q |
| |
|
|||||||| ||||||| |||||||||| |
|
|
| T |
29287868 |
tgggataacggaataggatactctttct |
29287841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 202 - 282
Target Start/End: Complemental strand, 29271334 - 29271254
Alignment:
| Q |
202 |
tgtattacataaatcaaatacagctaaagcataagaaatgccaagctgtatcaaaacagatcatagtttgatacagagaaa |
282 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
29271334 |
tgtattacatgaatcaaatctagctaaagcataagaaatgcaaagctatatcaaaagagatcatagtttgatacagagaaa |
29271254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 669 - 800
Target Start/End: Complemental strand, 28614783 - 28614653
Alignment:
| Q |
669 |
ggtggtacattaatcctaaattgatgatttttatggttaagcgttgcaactgaaaactaattcttacacaccacaccaaacctaacatgatctatgtgtt |
768 |
Q |
| |
|
||||||| | ||||| |||||||||| |||| |||||||||| |||||||||| | || |||| ||||| |||| |||||||||||||||||||||| |
|
|
| T |
28614783 |
ggtggtatagtaatcataaattgatggttttgatggttaagctttgcaactgatcgccaagtcttgcacacgacactgaacctaacatgatctatgtgtt |
28614684 |
T |
|
| Q |
769 |
cttccaacttatcaagaacaaaactaagagga |
800 |
Q |
| |
|
|||| ||||| ||||||| ||| |||||||| |
|
|
| T |
28614683 |
cttctaactt-gcaagaaccaaattaagagga |
28614653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 29271527 - 29271430
Alignment:
| Q |
16 |
atgaatgcaattgccaaaatgt----ctttttatctgaagacattttggttgatgatattacaatataaggataaataaaaccaatagttgtcgatata |
110 |
Q |
| |
|
||||||||||||||| |||||| ||||||||| ||||||||||||||||||||| |||||| ||||||||| |||||| ||||||||| |||||| |
|
|
| T |
29271527 |
atgaatgcaattgcccaaatgtatgtctttttatcagaagacattttggttgatgat-ttacaacataaggatatataaaaagaatagttgttgatata |
29271430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 6e-18; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 687 - 822
Target Start/End: Complemental strand, 4235539 - 4235404
Alignment:
| Q |
687 |
aattgatgatttttatggttaagcgttgcaactgaaaactaattcttacacaccacaccaaacctaacatgatctatgtgttcttccaacttatcaagaa |
786 |
Q |
| |
|
||||||||||||| |||||||| | |||||| ||| | || |||| ||||| ||||||||| |||||||| |||||||||||| ||||| ||||| | |
|
|
| T |
4235539 |
aattgatgattttgatggttaaactttgcaattgatcgccaactcttgcacacagcaccaaaccaaacatgatatatgtgttcttctaacttgtcaagta |
4235440 |
T |
|
| Q |
787 |
caaaactaagaggatatgcttctaaattttcccaat |
822 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||| |
|
|
| T |
4235439 |
tcaaactaagaggaagtgcttctaaatttgcccaat |
4235404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 701 - 823
Target Start/End: Complemental strand, 49149665 - 49149543
Alignment:
| Q |
701 |
atggttaagcgttgcaactgaaaactaattcttacacaccacaccaaacctaacatgatctatgtgttcttccaacttatcaagaacaaaactaagagga |
800 |
Q |
| |
|
|||||||||| |||||| ||| | || |||| ||||| ||||||||| ||||||||||||||||||||| ||| | |||||||| |||| ||||||| |
|
|
| T |
49149665 |
atggttaagctttgcaattgatcgccaactcttgcacacagcaccaaaccaaacatgatctatgtgttcttctaacatgtcaagaaccaaaccaagagga |
49149566 |
T |
|
| Q |
801 |
tatgcttctaaattttcccaatc |
823 |
Q |
| |
|
|||| |||||||| ||||||| |
|
|
| T |
49149565 |
attgctcctaaatttacccaatc |
49149543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 687 - 822
Target Start/End: Complemental strand, 49145132 - 49144997
Alignment:
| Q |
687 |
aattgatgatttttatggttaagcgttgcaactgaaaactaattcttacacaccacaccaaacctaacatgatctatgtgttcttccaacttatcaagaa |
786 |
Q |
| |
|
||||||||||||| |||| ||| | |||||| ||| | || |||| ||||| |||||||| ||||| ||||||||||||||| ||||| ||||||| |
|
|
| T |
49145132 |
aattgatgattttgatggctaaactttgcaattgatcgccaagtcttgcacacagcaccaaacgaaacataatctatgtgttcttctaacttgtcaagaa |
49145033 |
T |
|
| Q |
787 |
caaaactaagaggatatgcttctaaattttcccaat |
822 |
Q |
| |
|
||| |||||| | |||||||||||| |||||| |
|
|
| T |
49145032 |
tcaaattaagagcaagggcttctaaatttgcccaat |
49144997 |
T |
|
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