View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21149_high_13 (Length: 345)
Name: NF21149_high_13
Description: NF21149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21149_high_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 90 - 330
Target Start/End: Original strand, 54879121 - 54879361
Alignment:
| Q |
90 |
gagcttgttgtatcagaaaatgtagaatgatgcaattattttttctcttaggatactgatgatggataatttgttccaattgaatgatgcaatttcacta |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54879121 |
gagcttgttgtatcagaaaatgtagaatgatgcaattattttttctcttaggatactgatgatggataatttgttccaattgaatgatgcaatttcacta |
54879220 |
T |
|
| Q |
190 |
attattggttattgtatttgagtatgtttgtttatgttccttcagattatgtttacaactgtgcatttgatgctttgagcttgttgtatcagaaattgtc |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54879221 |
attattggttattgtatttgagtatgtttgtttatgttccttcagattatgtgtacaactgtgcatttgatgctttgagcttgttgtatcagaaattgtc |
54879320 |
T |
|
| Q |
290 |
gaatggttcaatannnnnnnctgttagtgtagagatgattg |
330 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |
|
|
| T |
54879321 |
gaatggttcaatatttttttctgttagtgtagagatgattg |
54879361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 54878979 - 54878884
Alignment:
| Q |
1 |
aaaacttatctatagaacagcactaccctgttcctgttcttcaagcttcttaatatgtgccttaagaaccataataagttctctagcaggagcttg |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54878979 |
aaaacttatctatagaacagcactaccctgttcctgttcttcaagcttcttaatatgtgccttaagaaccataataagttctctagcaggagcttg |
54878884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 90 - 202
Target Start/End: Original strand, 54879297 - 54879414
Alignment:
| Q |
90 |
gagcttgttgtatcagaaaatgtagaatgatgcaattattttttctcttaggatactgatgat----ggataattt-gttccaattgaatgatgcaattt |
184 |
Q |
| |
|
||||||||||||||||||| ||| ||||| | |||| |||||||| |||| || |||||| ||||||||| ||||| ||||||||||||||||| |
|
|
| T |
54879297 |
gagcttgttgtatcagaaattgtcgaatggttcaatatttttttctgttagtgtagagatgattgatggataattttgttcccattgaatgatgcaattt |
54879396 |
T |
|
| Q |
185 |
cactaattattggttatt |
202 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
54879397 |
cactaattattggttatt |
54879414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 294
Target Start/End: Original strand, 54879068 - 54879149
Alignment:
| Q |
218 |
tgtttatgttccttcagattatgtttacaac-----tgtgcatttgatgctttgagcttgttgtatcagaaattgtcgaatg |
294 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| ||| |||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
54879068 |
tgtttatgttccctcagattatgtgtacaatacaagtgtacatttgatgctttgagcttgttgtatcagaaaatgtagaatg |
54879149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University