View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21149_high_25 (Length: 210)
Name: NF21149_high_25
Description: NF21149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21149_high_25 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 25 - 208
Target Start/End: Original strand, 29024550 - 29024733
Alignment:
| Q |
25 |
ttgagttgctactatcatcatccatgtcttcctcttcaacaacaagttcttcagcgacatcattatcatcatcaactaatggttcttcagcaaaataatt |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29024550 |
ttgagttgctactatcatcatccatgtcttcctcttcaacaacaagttcttcagcgacatcattatcatcatcaactaatggttcttcagcaaaataatt |
29024649 |
T |
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| Q |
125 |
ttcatcagtcatataatcaaaagcaggtagaatttgcgcaattatttgagcaacaaaatcttcttcagaaaaatcttcttcttc |
208 |
Q |
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| T |
29024650 |
ttcatcagtcatataatgaaaagaaggtagaacgtgcacaattatttgagcaacaaaatcttcttcagaaaaatcttcttcttc |
29024733 |
T |
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Back To:
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Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 36067216 - 36067288
Alignment:
| Q |
25 |
ttgagttgctactatcatcatccatgtcttcctcttcaacaacaagttcttcagcgacatcattatcatcatc |
97 |
Q |
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|||||||||||||||||||||| | | |||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
36067216 |
ttgagttgctactatcatcatcactattatcctcttcaacaacaagttcatcagcaacatcattatcatcatc |
36067288 |
T |
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