View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21149_high_6 (Length: 496)
Name: NF21149_high_6
Description: NF21149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21149_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 40223734 - 40223451
Alignment:
| Q |
1 |
ccatcactaatcctctcaaccttaggtaaatgctcccatcatacctattttttgaagtaacatgtggctaacctaaaattttaagttaataatatgtgcc |
100 |
Q |
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| T |
40223734 |
ccatcactaatcctctcaaccttaggtaaatgctcccatcatacctattttttgaagtaacatgtggctaacctaaaattttaagttaataatatgtgcc |
40223635 |
T |
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| Q |
101 |
tagcttattttagcaaaacatttctgaagtattattattattgacttctnnnnnnnttgaattaactcttgtgtaggatgtttgtggggacgtggaatgt |
200 |
Q |
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| T |
40223634 |
tagcttattttagcaaaacatttctgaagtattattattattgacttctaaaaaaattgaattaactcttgtgtaggatgtttgtggggacgtggaatgt |
40223535 |
T |
|
| Q |
201 |
tgggggaaagtcaccaaatgaaaatttggacttgaaaaattggctgatatctacttcgccagctgacatatatgttattgggta |
284 |
Q |
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| T |
40223534 |
tgggggaaagtcaccaaatgaaaatttggacttgaaaaattggctgatatctacttcgccagctgacatatatgttattgggta |
40223451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 312 - 484
Target Start/End: Complemental strand, 40223424 - 40223252
Alignment:
| Q |
312 |
acttaatcttatcatctatgttccctatttggctatctactactttgtctgtagtattttatttatttttcatttccactcaatccacctattacctttt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40223424 |
acttaatcttatcatctatgttccctatttggctatctactactttgtctgtagtattttatttatttttcatttccactcaatccacctattacctttt |
40223325 |
T |
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| Q |
412 |
atatatgcttcaattaaatctctttaaatattcttaggagttcaagtttactcaaaacatctgtcttgatgat |
484 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40223324 |
atatatgcatcaattaaatctctttaaatattcttaggagttcaagtttactcaaaacatctgtcttgatgat |
40223252 |
T |
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