View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21149_low_11 (Length: 453)
Name: NF21149_low_11
Description: NF21149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21149_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 90 - 433
Target Start/End: Original strand, 4367339 - 4367682
Alignment:
| Q |
90 |
tttaatcgtggtggtcatagcattgataaggctaatgctggtgaagaagatagcaatggctttgttattcctgaaaaggttcattttttgattccatgct |
189 |
Q |
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| T |
4367339 |
tttaatcgtggtggtcatagcattgataaggctaatgctggtgaagaagatagcaatggctttgttattcctgaaaaggttcattttttgattccatgca |
4367438 |
T |
|
| Q |
190 |
agtgtttatcttttagttttaagtgcatgtgtaaattgtgttnnnnnnngtgcatgtgtaaattgttgtttgaattggtgttatggtttaagctttttca |
289 |
Q |
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| T |
4367439 |
agtgtttatcttttagttttaagtgcatgtgtaaattgtgttaaaaaaagtgcatgtgtaaattgttgtttgaattggtgttatggtttaagctttttca |
4367538 |
T |
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| Q |
290 |
tgttttggtagcttgatggggggaaattgcacgcagttcatttttgttggtaatgtgggtttatttctatgattgtgatttgtttgttacttgtgaactt |
389 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4367539 |
tgttttggtggcttgatggggggaaattgcacgcagttcatttttgttggtaatgtgggtttatttctatgattgtgatttgtttgttacttgtgaactt |
4367638 |
T |
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| Q |
390 |
ttttactgtgaatgtgagtgtgattttgtcttgcttgtggagtg |
433 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4367639 |
ttttactgtgaatgtgagtgtgattttgtcttgcttgtggagtg |
4367682 |
T |
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