View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21149_low_12 (Length: 441)
Name: NF21149_low_12
Description: NF21149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21149_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 20 - 418
Target Start/End: Original strand, 34109688 - 34110082
Alignment:
| Q |
20 |
agaatggccatagaattcgttatggcagttgcagaaacagttgtaattgttcaagagagaaactctgagcctttttcaccaatcaaccgtgcaaatactc |
119 |
Q |
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| T |
34109688 |
agaatggccatagaattcgttatggcagttgcagaaacagttgtaattgttcaagagagaaactctgagcctttttcaccaatcaatcgtgcaaatactc |
34109787 |
T |
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| Q |
120 |
ctcttcctttttatggttatctccgttgagtcgagtcgatttcaactctacttctgtttaatttgttaattagtcttttgtatttttccattttcagtta |
219 |
Q |
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| T |
34109788 |
ctcttcctttttatggttatctccgttgagtcgagtcgatttcaactctacttctgtttaatttgttaattagtcttttgtttttttccattttctgaaa |
34109887 |
T |
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| Q |
220 |
ctgaattcttcaagttgtaaatacagaagatcagtatcataatatttcctttgatcgataagtttgtatcaaattgatgcccatgtttttcgggtttctt |
319 |
Q |
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| T |
34109888 |
ctgaattcttcaagttgtaaatacagaagatcagtatcataatatttccttt----gataagtttgtatcaaattgatgcccatgttttttgggtttgtt |
34109983 |
T |
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| Q |
320 |
gaattatcaattttagttcttattcaagctcttggttagttccaagatgcaatcatatatatgttgattatgatgaatgaaatctgtattttgtttatg |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34109984 |
gaattatcaattttagttcttattcaagctcttggttagttccaagatgcaatcatatatatgttgattatgatgaatgaaatctatattttgtttatg |
34110082 |
T |
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