View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21149_low_13 (Length: 433)

Name: NF21149_low_13
Description: NF21149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21149_low_13
NF21149_low_13
[»] chr7 (4 HSPs)
chr7 (166-433)||(1885609-1885876)
chr7 (164-351)||(1875267-1875454)
chr7 (394-432)||(11272570-11272608)
chr7 (394-432)||(24339679-24339717)
[»] scaffold0314 (1 HSPs)
scaffold0314 (360-431)||(8986-9060)
[»] chr6 (9 HSPs)
chr6 (386-432)||(21395284-21395330)
chr6 (368-404)||(785397-785433)
chr6 (399-433)||(785444-785478)
chr6 (394-432)||(9107354-9107392)
chr6 (394-432)||(16766734-16766772)
chr6 (361-403)||(32225336-32225378)
chr6 (396-433)||(10760828-10760865)
chr6 (368-404)||(1334731-1334767)
chr6 (384-432)||(28862159-28862207)
[»] chr1 (4 HSPs)
chr1 (368-405)||(18950995-18951032)
chr1 (368-433)||(40176639-40176704)
chr1 (394-432)||(47989534-47989572)
chr1 (394-430)||(31694694-31694730)
[»] scaffold0122 (1 HSPs)
scaffold0122 (360-404)||(10252-10296)
[»] scaffold0136 (1 HSPs)
scaffold0136 (394-432)||(3833-3871)
[»] chr8 (3 HSPs)
chr8 (394-432)||(15816113-15816151)
chr8 (394-430)||(22652015-22652051)
chr8 (400-432)||(25566878-25566910)
[»] chr5 (1 HSPs)
chr5 (394-432)||(21542067-21542105)
[»] scaffold0003 (1 HSPs)
scaffold0003 (394-422)||(241641-241669)
[»] chr4 (2 HSPs)
chr4 (394-430)||(847990-848026)
chr4 (368-404)||(39619055-39619091)
[»] chr2 (1 HSPs)
chr2 (393-433)||(35198214-35198254)


Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 166 - 433
Target Start/End: Complemental strand, 1885876 - 1885609
Alignment:
Q  166 tctcttcatgaaagatagtagtgaagggatttcattactaacagctttagaaacaagcacatatcctctcccccctgcattatgattaaaacacatatag 265  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1885876 tctcttcatgaaatatagtagtgaagggatttcattaccaacagctttagaaacaagcacatatcctctgccccctgcattatgattaaaacacatatag 1885777  T
Q  266 atattgaattgttgtgatacctctggtagtaaccgacagaggccgattaagtgacgacattcgagcgtgacatcaggtggttccgatgacggcattgcac 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |    
T  1885776 atattgaattgttgtgatacctctggtagtaaccgacagaggccgattaagtgacgacattcgagtgtgacatcaggtggttccgatgacggcattgctc 1885677  T
Q  366 aaacacttctgattgaacgtgtgtcctggtgtccgacaccaacacgacaccgacacttgtgattacat 433  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1885676 agacacttctgattgaacgtgtgtcctggtgtccgacaccaacacgacaccgacacttgtgattacat 1885609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 164 - 351
Target Start/End: Complemental strand, 1875454 - 1875267
Alignment:
Q  164 tttctcttcatgaaagatagtagtgaagggatttcattactaacagctttagaaacaagcacatatcctctcccccctgcattatgattaaaacacatat 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  1875454 tttctcttcatgaaagatagtagtgaagggatttcattactaacagctttagaaacaagcacatatcctctgccccctgcattattattaaaacacatat 1875355  T
Q  264 agatattgaattgttgtgatacctctggtagtaaccgacagaggccgattaagtgacgacattcgagcgtgacatcaggtggttccga 351  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||| ||||||||||||||||||||    
T  1875354 agatattgaattgttgtgatacctctggtagtaaccgacaaagtccgatttagtgacgacattcgagtgtgacatcaggtggttccga 1875267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 432
Target Start/End: Original strand, 11272570 - 11272608
Alignment:
Q  394 gtgtccgacaccaacacgacaccgacacttgtgattaca 432  Q
    |||||||||||| ||||||||||||||||||| ||||||    
T  11272570 gtgtccgacaccgacacgacaccgacacttgtaattaca 11272608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 432
Target Start/End: Complemental strand, 24339717 - 24339679
Alignment:
Q  394 gtgtccgacaccaacacgacaccgacacttgtgattaca 432  Q
    |||||||||||| ||||||||||||||||||| ||||||    
T  24339717 gtgtccgacaccgacacgacaccgacacttgtaattaca 24339679  T

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Target: scaffold0314 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 431
Target Start/End: Complemental strand, 9060 - 8986
Alignment:
Q  360 ttgcacaaacacttctgattgaacgtgtgtcctggtgtccgacac---caacacgacaccgacacttgtgattac 431  Q
    ||||||| ||||||||||||||| | |||||| ||||||||||||   | ||| |||||||||||||||||||||    
T  9060 ttgcacagacacttctgattgaaggcgtgtcccggtgtccgacacacacgacatgacaccgacacttgtgattac 8986  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 432
Target Start/End: Original strand, 21395284 - 21395330
Alignment:
Q  386 gtgtcctggtgtccgacaccaacacgacaccgacacttgtgattaca 432  Q
    |||||||||||||||||||  ||||||||||||||||||| ||||||    
T  21395284 gtgtcctggtgtccgacactgacacgacaccgacacttgtaattaca 21395330  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 368 - 404
Target Start/End: Original strand, 785397 - 785433
Alignment:
Q  368 acacttctgattgaacgtgtgtcctggtgtccgacac 404  Q
    ||||||||||||||| |||||||||||||||||||||    
T  785397 acacttctgattgaaggtgtgtcctggtgtccgacac 785433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 399 - 433
Target Start/End: Original strand, 785444 - 785478
Alignment:
Q  399 cgacaccaacacgacaccgacacttgtgattacat 433  Q
    ||||||| |||||||||||||||||||||||||||    
T  785444 cgacaccgacacgacaccgacacttgtgattacat 785478  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 432
Target Start/End: Original strand, 9107354 - 9107392
Alignment:
Q  394 gtgtccgacaccaacacgacaccgacacttgtgattaca 432  Q
    |||||||||||| ||||||||||||||||||| ||||||    
T  9107354 gtgtccgacaccgacacgacaccgacacttgtaattaca 9107392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 432
Target Start/End: Complemental strand, 16766772 - 16766734
Alignment:
Q  394 gtgtccgacaccaacacgacaccgacacttgtgattaca 432  Q
    |||||||||||| ||||||||||||||||||| ||||||    
T  16766772 gtgtccgacaccgacacgacaccgacacttgtaattaca 16766734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 403
Target Start/End: Original strand, 32225336 - 32225378
Alignment:
Q  361 tgcacaaacacttctgattgaacgtgtgtcctggtgtccgaca 403  Q
    |||||||||||| ||||||||| |||||||| |||||||||||    
T  32225336 tgcacaaacactcctgattgaaggtgtgtccaggtgtccgaca 32225378  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 433
Target Start/End: Original strand, 10760828 - 10760865
Alignment:
Q  396 gtccgacaccaacacgacaccgacacttgtgattacat 433  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  10760828 gtccgacaccaacacgacatcgacacgtgtgattacat 10760865  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 404
Target Start/End: Complemental strand, 1334767 - 1334731
Alignment:
Q  368 acacttctgattgaacgtgtgtcctggtgtccgacac 404  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  1334767 acacttctgattgaaggtgtgtcctggtgttcgacac 1334731  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 432
Target Start/End: Complemental strand, 28862207 - 28862159
Alignment:
Q  384 gtgtgtcctggtgtccgacaccaacacgacaccgacacttgtgattaca 432  Q
    ||||||||  ||||| |||||||||||||||||||||| | ||||||||    
T  28862207 gtgtgtcccagtgtcagacaccaacacgacaccgacacatatgattaca 28862159  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 368 - 405
Target Start/End: Complemental strand, 18951032 - 18950995
Alignment:
Q  368 acacttctgattgaacgtgtgtcctggtgtccgacacc 405  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  18951032 acacttctgattgaaggtgtgtcctggtgtccgacacc 18950995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 368 - 433
Target Start/End: Complemental strand, 40176704 - 40176639
Alignment:
Q  368 acacttctgattgaacgtgtgtcctggtgtccgacaccaacacgacaccgacacttgtgattacat 433  Q
    |||||| |||||||| ||| |||| ||||| ||| ||||||||||||| ||||| |||||||||||    
T  40176704 acacttgtgattgaaggtgcgtcccggtgttcgagaccaacacgacactgacacatgtgattacat 40176639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 432
Target Start/End: Complemental strand, 47989572 - 47989534
Alignment:
Q  394 gtgtccgacaccaacacgacaccgacacttgtgattaca 432  Q
    |||||||||||| ||||||||||||||||||| ||||||    
T  47989572 gtgtccgacaccgacacgacaccgacacttgtaattaca 47989534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 430
Target Start/End: Original strand, 31694694 - 31694730
Alignment:
Q  394 gtgtccgacaccaacacgacaccgacacttgtgatta 430  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  31694694 gtgtccgacaccgacacgacaccgacacttgtaatta 31694730  T

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Target: scaffold0122 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 404
Target Start/End: Original strand, 10252 - 10296
Alignment:
Q  360 ttgcacaaacacttctgattgaacgtgtgtcctggtgtccgacac 404  Q
    ||||||| ||||||||||||||| |||||||||| ||||||||||    
T  10252 ttgcacagacacttctgattgaaggtgtgtcctgctgtccgacac 10296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 432
Target Start/End: Original strand, 3833 - 3871
Alignment:
Q  394 gtgtccgacaccaacacgacaccgacacttgtgattaca 432  Q
    |||||||||||||||||||||| ||||||||| ||||||    
T  3833 gtgtccgacaccaacacgacactgacacttgtaattaca 3871  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 432
Target Start/End: Original strand, 15816113 - 15816151
Alignment:
Q  394 gtgtccgacaccaacacgacaccgacacttgtgattaca 432  Q
    |||||||||||||||||||||||||||||| | ||||||    
T  15816113 gtgtccgacaccaacacgacaccgacacttataattaca 15816151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 430
Target Start/End: Complemental strand, 22652051 - 22652015
Alignment:
Q  394 gtgtccgacaccaacacgacaccgacacttgtgatta 430  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  22652051 gtgtccgacaccgacacgacaccgacacttgtaatta 22652015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 432
Target Start/End: Complemental strand, 25566910 - 25566878
Alignment:
Q  400 gacaccaacacgacaccgacacttgtgattaca 432  Q
    |||||||||||||||||||||||||| ||||||    
T  25566910 gacaccaacacgacaccgacacttgtaattaca 25566878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 432
Target Start/End: Complemental strand, 21542105 - 21542067
Alignment:
Q  394 gtgtccgacaccaacacgacaccgacacttgtgattaca 432  Q
    |||||||||||| ||||||||||||||||||| ||||||    
T  21542105 gtgtccgacaccgacacgacaccgacacttgtaattaca 21542067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 422
Target Start/End: Complemental strand, 241669 - 241641
Alignment:
Q  394 gtgtccgacaccaacacgacaccgacact 422  Q
    |||||||||||||||||||||||||||||    
T  241669 gtgtccgacaccaacacgacaccgacact 241641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 430
Target Start/End: Complemental strand, 848026 - 847990
Alignment:
Q  394 gtgtccgacaccaacacgacaccgacacttgtgatta 430  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  848026 gtgtccgacaccaacaagacaccgacacttgtaatta 847990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 404
Target Start/End: Original strand, 39619055 - 39619091
Alignment:
Q  368 acacttctgattgaacgtgtgtcctggtgtccgacac 404  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  39619055 acacttctgattgaaggtgtgtcccggtgtccgacac 39619091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 393 - 433
Target Start/End: Original strand, 35198214 - 35198254
Alignment:
Q  393 ggtgtccgacaccaacacgacaccgacacttgtgattacat 433  Q
    ||||||||||| ||||||||||||| ||| |||||||||||    
T  35198214 ggtgtccgacaacaacacgacaccgtcacatgtgattacat 35198254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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