View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21149_low_14 (Length: 388)
Name: NF21149_low_14
Description: NF21149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21149_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 376
Target Start/End: Complemental strand, 28733446 - 28733088
Alignment:
| Q |
18 |
caatgtgctttggatatactcattctgatatcttacctcggcaccatccagtgcagattttaactgccctgcttcagctttaacggaaacaagctcggct |
117 |
Q |
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| T |
28733446 |
caatgtgctttggatatactcattctgatatcttacctcggcaccatccagtgcagattttagctgccctgcttcagctttaactgaaacaagctcggct |
28733347 |
T |
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| Q |
118 |
ttgagccggtttatctcctcgctttctacaacttccaatgcaggtaagcgaggagataaaccgactccactgaccaaatcatcctgaagtttgctcacaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28733346 |
ttgagccggtttatctcctcgctttctacaacttccaatgcaggtaagcgaggagataaaccgactccactgaccaaatcatcctgaagtttgctcacaa |
28733247 |
T |
|
| Q |
218 |
gttcctccagtgagcttacttgagaccttgatttctctaactctaaagctaaggattggtaatcttctgacgcttttgcaccttctaatcggagcgtttc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28733246 |
gttcctccagtgagcttacttgagaccttgatttctctaactctaaagctaaggattggtaatcttctgacgcttttgcaccttctaatcggagcgtttc |
28733147 |
T |
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| Q |
318 |
cactgtcttatttgcagcttccaattgcatttgagttgtaccaagtgtttccaatgcct |
376 |
Q |
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| T |
28733146 |
cactgtcttatttgcagcttccaattgcatttgagttgtaccaactgtttccaatgcct |
28733088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 204 - 350
Target Start/End: Complemental strand, 22110127 - 22109981
Alignment:
| Q |
204 |
aagtttgctcacaagttcctccagtgagcttacttgagaccttgatttctctaactctaaagctaaggattggtaatcttctgacgcttttgcaccttct |
303 |
Q |
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| T |
22110127 |
aagtttcctcacaagttcctccaaggactttgcttgagatcttgattgctccaactccaaagctaaggacttgtaagcttcagttgcttttagaccatct |
22110028 |
T |
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| Q |
304 |
aatcggagcgtttccactgtcttatttgcagcttccaattgcatttg |
350 |
Q |
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||||||| |||||||||||||||||| | | ||||||||||||||| |
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| T |
22110027 |
gatcggagtgtttccactgtcttatttaccgtttccaattgcatttg |
22109981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 204 - 350
Target Start/End: Original strand, 40584462 - 40584608
Alignment:
| Q |
204 |
aagtttgctcacaagttcctccagtgagcttacttgagaccttgatttctctaactctaaagctaaggattggtaatcttctgacgcttttgcaccttct |
303 |
Q |
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|||||| |||||||||||||||| || || ||||||| ||||||| ||| ||||| ||||||||||| | |||| |||| | |||||| ||| ||| |
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| T |
40584462 |
aagtttcctcacaagttcctccaaggactttgcttgagatcttgattgctccaactccaaagctaaggacttgtaagcttcagttgcttttagaccatct |
40584561 |
T |
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| Q |
304 |
aatcggagcgtttccactgtcttatttgcagcttccaattgcatttg |
350 |
Q |
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||||||| |||||||||||||||||| | | ||||||||||||||| |
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| T |
40584562 |
gatcggagtgtttccactgtcttatttaccgtttccaattgcatttg |
40584608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 46 - 137
Target Start/End: Complemental strand, 22110261 - 22110170
Alignment:
| Q |
46 |
tatcttacctcggcaccatccagtgcagattttaactgccctgcttcagctttaacggaaacaagctcggctttgagccggtttatctcctc |
137 |
Q |
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||||||| ||||||| |||||| ||||||||| |||||| || |||||| ||| | || | |||| |||||||||||| ||||||||||| |
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| T |
22110261 |
tatcttatctcggcaacatccaatgcagatttcaactgctctacttcagatttggcagagataagcgcggctttgagcccatttatctcctc |
22110170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 46 - 137
Target Start/End: Original strand, 40584328 - 40584419
Alignment:
| Q |
46 |
tatcttacctcggcaccatccagtgcagattttaactgccctgcttcagctttaacggaaacaagctcggctttgagccggtttatctcctc |
137 |
Q |
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||||||| ||||||| |||||| ||||||||| |||||| || |||||| ||| | || | |||| |||||||||||| ||||||||||| |
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| T |
40584328 |
tatcttatctcggcaacatccaatgcagatttcaactgctctacttcagatttggcagagataagcgcggctttgagcccatttatctcctc |
40584419 |
T |
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