View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21149_low_15 (Length: 365)
Name: NF21149_low_15
Description: NF21149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21149_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 47514953 - 47515292
Alignment:
| Q |
1 |
ggctgaagcgttagttaagccacttagccagattatttgatcatcttggagaagttgatcattgaagaagaacacttgctttgaaacgggaatgttatgg |
100 |
Q |
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| T |
47514953 |
ggctgaagcgttagttaagccacttagccagattatttgatcatcttggagaagttgatcattgaagaagaacacttgctttgaaacgggaatgttatgg |
47515052 |
T |
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| Q |
101 |
tgcttttctattttctttttcacttccaagaacgtttcagagtgaccaatttccattgtgaaagattctccactctccctcatgaaagtcacgtccattt |
200 |
Q |
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| T |
47515053 |
tgcttttctattttctttttcacttccaagaacgtttcagagtgaccaatttccattgtgaaagattctccactctccctcatgaaagtcacgtccattt |
47515152 |
T |
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| Q |
201 |
caataagcaagtgtaacaaatgaaagatattgtaactgaatttaacaatcacttgacttcatatagaggtagttacaaatcttatatataaacaattgca |
300 |
Q |
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| T |
47515153 |
caataagcaagtgtaacaaatgaaagatattgtaactgaatttaacaatcacttgacttcatatagaggtagttacaaatcttatatataaacaattgca |
47515252 |
T |
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| Q |
301 |
atataacatgtgccatgcaaaggaaaggtctttcaagaga |
340 |
Q |
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| T |
47515253 |
atataacacgtgccatgcaaaggaaaggtctttcaagaga |
47515292 |
T |
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