View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21149_low_16 (Length: 358)
Name: NF21149_low_16
Description: NF21149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21149_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 24 - 260
Target Start/End: Original strand, 37297546 - 37297782
Alignment:
| Q |
24 |
ataaactgttttcggcttattttcatatgttgttatgttataaacgcttaattaagatgttgaattataaaagaaagcatttgagaaattaaccnnnnnn |
123 |
Q |
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| T |
37297546 |
ataaattgttttcggcttattttcatatgttgttatgttataaacgcttaattaagatgttgaattataaaagaaagcatttgagaaattaaccaaaaaa |
37297645 |
T |
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| Q |
124 |
ntgaggattaagaaattgaacctgaataacatcttcaacacggtcattgcaacgatgagctttgggttcaggatgattctctcctgtaattccccatgga |
223 |
Q |
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| T |
37297646 |
atgaggattgagaaattgaacctgaataacatcttcaacacggtcattgcaacgatgagctttgggttcaggatgattctctcctgtaattccccatgga |
37297745 |
T |
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| Q |
224 |
ctctctcgacgaggcactggtcttgtctcgctgctca |
260 |
Q |
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| T |
37297746 |
ctctctcgacgaggcactggtcttgtctcgctgctca |
37297782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 348
Target Start/End: Original strand, 37297825 - 37297882
Alignment:
| Q |
291 |
ctctctcttttgtttgcttcgtccnnnnnnnctacactacactttctctacttctctg |
348 |
Q |
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| T |
37297825 |
ctctctcttttgtttgcttcgtccaaaaaaactccactacactttctctacttctctg |
37297882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 2735137 - 2735096
Alignment:
| Q |
16 |
cattttccataaactgttttcggcttattttcatatgttgtt |
57 |
Q |
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| T |
2735137 |
catttttcataagctgttttcggcttattttcataagttgtt |
2735096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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