View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21149_low_18 (Length: 327)
Name: NF21149_low_18
Description: NF21149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21149_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 14 - 309
Target Start/End: Complemental strand, 7624502 - 7624207
Alignment:
| Q |
14 |
agagatttatacgtaaacaatgttgtcaaatagcagcattattgcatgttgaaatttgaacaacactgaaggtaagatatatcattgattcattgatgtt |
113 |
Q |
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| T |
7624502 |
agagatttatacgtaaacaatgttgtcaaatagcagcattattgcatggtgaaatttgaacaacactgaaggtaagatatatcattgattcattgatgtt |
7624403 |
T |
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| Q |
114 |
tgctagaaagagaagagaaataataaagatgggtgaatgaaatgtaagagacaatcgatcgttaagtgatggttgttcaatagacatcttaaaattgttc |
213 |
Q |
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| T |
7624402 |
tgctagaaagagaagagaaataataaagatgggtgaatgaaacgtaagagacaatcgatcgttaagtgatggttgttcaatagacatcttaaaattgttc |
7624303 |
T |
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| Q |
214 |
atttgactgaaaaaagttgatccgaaattatgtctcaatcaaatgttactcagtaagataaacgatcgagagtacgacccgaatacgagcgaaatt |
309 |
Q |
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| T |
7624302 |
acttgactgaaaaaagttgatccgaaattacgtctcaatcagatgttactcggtaaaacaagcgatcgagagtacgacccgaacacgagcgaaatt |
7624207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 29173150 - 29173102
Alignment:
| Q |
180 |
tgatggttgttcaatagacatcttaaaattgttcatttgactgaaaaaa |
228 |
Q |
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| T |
29173150 |
tgatggttactcaatagacatctcaaaattgttcatttgattgaaaaaa |
29173102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 9701051 - 9701100
Alignment:
| Q |
186 |
ttgttcaatagacatcttaaaattgttcatttgactgaaaaaagttgatc |
235 |
Q |
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| T |
9701051 |
ttgttcaatagatctcttaaaattgttcatcttgctgaaaaaagttgatc |
9701100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 22640028 - 22640082
Alignment:
| Q |
181 |
gatggttgttcaatagacatcttaaaattgttcatttgactgaaaaaagttgatc |
235 |
Q |
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| T |
22640028 |
gatggttgttcaatagataccgcaaaattattcatttgactgaaaaaagttgatc |
22640082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 35978600 - 35978649
Alignment:
| Q |
180 |
tgatggttgttcaatagacatcttaaaattgttcatttgactgaaaaaag |
229 |
Q |
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| T |
35978600 |
tgatggttgctcaatagacaccttaaaattgttcacttgactaaaaaaag |
35978649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 45260569 - 45260606
Alignment:
| Q |
180 |
tgatggttgttcaatagacatcttaaaattgttcattt |
217 |
Q |
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| T |
45260569 |
tgatggttgctcaatacacatcttaaaattgttcattt |
45260606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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