View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21149_low_24 (Length: 249)
Name: NF21149_low_24
Description: NF21149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21149_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 8 - 247
Target Start/End: Complemental strand, 46752681 - 46752446
Alignment:
| Q |
8 |
agatgcagggttctggtaagattgcacccacaaaaatctaaaagattgatagatttatttatataaaatttagctgaaaaaagatcttttagaatttaga |
107 |
Q |
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| T |
46752681 |
agatgaagggttctggtaagattgcacccacaaaaatctaaaagattgatagatttatttatataaaatttagctgaaaaaagatcttttagaatttaga |
46752582 |
T |
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| Q |
108 |
ataaaacaaaatatcagtagcttcattaacaactgtatcagctagtattaacagccatgattgcaaagaaggttccaatccaaatagtgaccatgcactg |
207 |
Q |
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| T |
46752581 |
ataaaacaaaatatcagcagcttcattaacaactgtatcagctagtattaacagccatgattgcaaagaaggttccaatccaaatagtgaccatgcactg |
46752482 |
T |
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| Q |
208 |
aagctttctgagacccatattatgttaaaagaaatacgaa |
247 |
Q |
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| T |
46752481 |
aagctttctgagaccc----tatgttaaaagaaatacgaa |
46752446 |
T |
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