View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21149_low_27 (Length: 239)

Name: NF21149_low_27
Description: NF21149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21149_low_27
NF21149_low_27
[»] chr5 (11 HSPs)
chr5 (1-221)||(39451677-39451897)
chr5 (1-202)||(39455304-39455505)
chr5 (50-221)||(39463833-39464004)
chr5 (18-202)||(39460941-39461128)
chr5 (63-215)||(39476251-39476403)
chr5 (50-202)||(39487191-39487343)
chr5 (50-202)||(39483989-39484141)
chr5 (58-213)||(39457579-39457734)
chr5 (58-221)||(39470036-39470198)
chr5 (54-202)||(39472760-39472908)
chr5 (63-202)||(43311825-43311964)


Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 39451677 - 39451897
Alignment:
Q  1 taggacctatattaagtcctgagcccaaaaccaaggacgttgttggttctgatatcatcaactggcttgatgatcaacctctttcttctgtagttttcct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  39451677 taggacctatattaagtcctgagcccaaaaccaaggacgttgttggttctgatatcatcaactggcttgatgatcaacctctttcttctgttgttttcct 39451776  T
Q  101 ctgctttgggagcaggggttgtttcgatgaggatcaggttaaggagatcgcacatgctattgagaatagtggggcccacttcgtatggtctctccgtaaa 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39451777 ctgctttgggagcaggggttgtttcgatgaggaccaggttaaggagatcgcacatgctattgagaatagtggggcccacttcgtatggtctctccgtaaa 39451876  T
Q  201 ccagcaccaaagggcgccatg 221  Q
    |||||||||||||||||||||    
T  39451877 ccagcaccaaagggcgccatg 39451897  T

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Target: chr5; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 39455304 - 39455505
Alignment:
Q  1 taggacctatattaagtcctgagcccaaaaccaaggacgttgttggttctgatatcatcaactggcttgatgatcaacctctttcttctgtagttttcct 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| || || ||||||||    
T  39455304 taggacctatattaagtcctgagcccaaaaccaaggacattgttggttctgatatcatcaagtggcttgatgatcaacctctttcctccgtcgttttcct 39455403  T
Q  101 ctgctttgggagcaggggttgtttcgatgaggatcaggttaaggagatcgcacatgctattgagaatagtggggcccacttcgtatggtctctccgtaaa 200  Q
     ||||| || ||||  |||||||| |||||||||||||||||||||||||||  ||||||||||||||||  | |||||||| |||||||||||||||||    
T  39455404 ttgcttcggaagcaaaggttgttttgatgaggatcaggttaaggagatcgcatgtgctattgagaatagtaagtcccacttcatatggtctctccgtaaa 39455503  T
Q  201 cc 202  Q
    ||    
T  39455504 cc 39455505  T

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Target: chr5; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 50 - 221
Target Start/End: Complemental strand, 39464004 - 39463833
Alignment:
Q  50 tgatatcatcaactggcttgatgatcaacctctttcttctgtagttttcctctgctttgggagcaggggttgtttcgatgaggatcaggttaaggagatc 149  Q
    |||||||||||| ||||||||||||||||||| ||| || ||||||||||||||||| |||||||| |||| ||||||||| |||||||||||||||||     
T  39464004 tgatatcatcaagtggcttgatgatcaacctccttcctcagtagttttcctctgcttcgggagcagaggttctttcgatgaagatcaggttaaggagatt 39463905  T
Q  150 gcacatgctattgagaatagtggggcccacttcgtatggtctctccgtaaaccagcaccaaagggcgccatg 221  Q
    |||| ||||||||||||||||||||| | ||| || |||||||| ||||||||  |||||||||||||||||    
T  39463904 gcacttgctattgagaatagtggggctcgctttgtttggtctctacgtaaacccccaccaaagggcgccatg 39463833  T

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Target: chr5; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 39460941 - 39461128
Alignment:
Q  18 cctgagcccaaaaccaaggacgttgttggttc---tgatatcatcaactggcttgatgatcaacctctttcttctgtagttttcctctgctttgggagca 114  Q
    |||||||||||||||||||     ||||||||   |||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||  |    
T  39460941 cctgagcccaaaaccaagggaacagttggttcagatgatatcatcaagtggcttgatgatcaacctctttcctccgtagttttcctctgctttgggacta 39461040  T
Q  115 ggggttgtttcgatgaggatcaggttaaggagatcgcacatgctattgagaatagtggggcccacttcgtatggtctctccgtaaacc 202  Q
    |||||   ||||||||||||||| ||||||||||||||||||| |||||| ||||||| | ||| ||| |||||||||| ||||||||    
T  39461041 ggggtaccttcgatgaggatcagattaaggagatcgcacatgccattgaggatagtggcgtccatttcatatggtctcttcgtaaacc 39461128  T

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Target: chr5; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 63 - 215
Target Start/End: Original strand, 39476251 - 39476403
Alignment:
Q  63 tggcttgatgatcaacctctttcttctgtagttttcctctgctttgggagcaggggttgtttcgatgaggatcaggttaaggagatcgcacatgctattg 162  Q
    ||||||||||||||||||| ||| || ||||||||||||||||| ||||| ||||||| ||| ||||| ||||||||||||||||||||||||||| |||    
T  39476251 tggcttgatgatcaacctccttcctccgtagttttcctctgcttcgggagtaggggttattttgatgaagatcaggttaaggagatcgcacatgctgttg 39476350  T
Q  163 agaatagtggggcccacttcgtatggtctctccgtaaaccagcaccaaagggc 215  Q
    ||||||||||||| | |||||| |||||||| ||||||||  || ||||||||    
T  39476351 agaatagtggggcacgcttcgtgtggtctctgcgtaaacctccagcaaagggc 39476403  T

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Target: chr5; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 50 - 202
Target Start/End: Original strand, 39487191 - 39487343
Alignment:
Q  50 tgatatcatcaactggcttgatgatcaacctctttcttctgtagttttcctctgctttgggagcaggggttgtttcgatgaggatcaggttaaggagatc 149  Q
    |||||||||||| ||||||||||||||||||| ||| || ||||||||||||||||| ||||||||||| | ||||||||||||||||||||| |||||     
T  39487191 tgatatcatcaagtggcttgatgatcaacctccttcctcggtagttttcctctgcttcgggagcaggggctctttcgatgaggatcaggttaaagagatt 39487290  T
Q  150 gcacatgctattgagaatagtggggcccacttcgtatggtctctccgtaaacc 202  Q
    |||||||||||||||||| |||| ||||  || || |||||||| ||||||||    
T  39487291 gcacatgctattgagaattgtggagcccgttttgtgtggtctctgcgtaaacc 39487343  T

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Target: chr5; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 50 - 202
Target Start/End: Original strand, 39483989 - 39484141
Alignment:
Q  50 tgatatcatcaactggcttgatgatcaacctctttcttctgtagttttcctctgctttgggagcaggggttgtttcgatgaggatcaggttaaggagatc 149  Q
    |||||| || || |||||| || ||||||||| ||| || ||||||||||||||||||||||| ||||||| ||| ||||| ||||||||||||||||||    
T  39483989 tgatataatgaagtggcttcataatcaacctccttcctccgtagttttcctctgctttgggagtaggggttattttgatgaagatcaggttaaggagatc 39484088  T
Q  150 gcacatgctattgagaatagtggggcccacttcgtatggtctctccgtaaacc 202  Q
    ||||||| | |||||||||||||||| | |||||| |||||||| ||||||||    
T  39484089 gcacatgttgttgagaatagtggggcacgcttcgtgtggtctctgcgtaaacc 39484141  T

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Target: chr5; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 58 - 213
Target Start/End: Complemental strand, 39457734 - 39457579
Alignment:
Q  58 tcaactggcttgatgatcaacctctttcttctgtagttttcctctgctttgggagcaggggttgtttcgatgaggatcaggttaaggagatcgcacatgc 157  Q
    |||| ||||||||||||||||||| ||| || | ||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||| | |||    
T  39457734 tcaagtggcttgatgatcaacctccttcctcggaagttttcctctgcttcgggagcagggggtttttcgatgaggatcaggttaaggagatcgcccttgc 39457635  T
Q  158 tattgagaatagtggggcccacttcgtatggtctctccgtaaaccagcaccaaagg 213  Q
    | | ||||||| ||||| ||  || || |||||||| ||||||||| |||| ||||    
T  39457634 tgtagagaatactggggtccgatttgtgtggtctctacgtaaaccaccaccgaagg 39457579  T

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Target: chr5; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 58 - 221
Target Start/End: Complemental strand, 39470198 - 39470036
Alignment:
Q  58 tcaactggcttgatgatcaacctctttcttctgtagttttcctctgctttgggagcaggggttgtttcgatgaggatcaggttaaggagatcgcacatgc 157  Q
    |||| |||||||||||||| |||| ||| || ||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| |||||||| |||    
T  39470198 tcaagtggcttgatgatcagcctccttcctcggtagttttcctctgcttcgggagca-gggttttttcgatgaggatcaggttaaggggatcgcacttgc 39470100  T
Q  158 tattgagaatagtggggcccacttcgtatggtctctccgtaaaccagcaccaaagggcgccatg 221  Q
    | | ||||||| ||||| ||   | || |||||||| ||||||||| |||| |||||| |||||    
T  39470099 tgtagagaatactggggtccgtattgtgtggtctctacgtaaaccaccacctaagggcaccatg 39470036  T

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Target: chr5; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 54 - 202
Target Start/End: Original strand, 39472760 - 39472908
Alignment:
Q  54 atcatcaactggcttgatgatcaacctctttcttctgtagttttcctctgctttgggagcaggggttgtttcgatgaggatcaggttaaggagatcgcac 153  Q
    |||||||| ||||||||||||||||||   || || ||||||||||||||||| || || | ||||| |||||| ||||||||||||| | |||| |||     
T  39472760 atcatcaagtggcttgatgatcaacctgcatcctcagtagttttcctctgcttcggaagtatgggttctttcgacgaggatcaggttacgcagattgcat 39472859  T
Q  154 atgctattgagaatagtggggcccacttcgtatggtctctccgtaaacc 202  Q
      ||||||||||||||||||||||  ||| |||||||||| ||||||||    
T  39472860 gcgctattgagaatagtggggcccggttcatatggtctcttcgtaaacc 39472908  T

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Target: chr5; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 63 - 202
Target Start/End: Complemental strand, 43311964 - 43311825
Alignment:
Q  63 tggcttgatgatcaacctctttcttctgtagttttcctctgctttgggagcaggggttgtttcgatgaggatcaggttaaggagatcgcacatgctattg 162  Q
    ||||| ||||| ||||||||||| || |||||||  || ||||||||||||| ||||| |||||||||||||||  ||| |||||| ||  |||||||||    
T  43311964 tggctcgatgaccaacctctttcgtccgtagtttatctttgctttgggagcaagggttctttcgatgaggatcaaattagggagattgcgtatgctattg 43311865  T
Q  163 agaatagtggggcccacttcgtatggtctctccgtaaacc 202  Q
    |||| |||| ||| | |||| | |||||||| || |||||    
T  43311864 agaaaagtgaggctcgcttcctgtggtctctgcgaaaacc 43311825  T

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