View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21149_low_28 (Length: 237)

Name: NF21149_low_28
Description: NF21149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21149_low_28
NF21149_low_28
[»] chr7 (17 HSPs)
chr7 (3-114)||(33140230-33140342)
chr7 (3-88)||(20559773-20559858)
chr7 (3-116)||(20560217-20560331)
chr7 (1-117)||(42901070-42901187)
chr7 (3-114)||(33139774-33139886)
chr7 (3-116)||(4180274-4180388)
chr7 (3-114)||(4179637-4179749)
chr7 (3-114)||(40640653-40640762)
chr7 (1-114)||(42900647-42900761)
chr7 (3-88)||(30414208-30414293)
chr7 (3-114)||(40641106-40641218)
chr7 (1-88)||(35211929-35212016)
chr7 (3-88)||(25137439-25137524)
chr7 (3-88)||(25137860-25137946)
chr7 (53-88)||(29314609-29314644)
chr7 (52-88)||(29006375-29006411)
chr7 (52-88)||(29007183-29007219)
[»] chr1 (21 HSPs)
chr1 (3-114)||(12800406-12800518)
chr1 (3-119)||(12799984-12800101)
chr1 (3-114)||(2821425-2821537)
chr1 (3-116)||(2820956-2821070)
chr1 (1-114)||(28371637-28371751)
chr1 (1-114)||(50164643-50164757)
chr1 (1-115)||(28371198-28371313)
chr1 (1-115)||(48594159-48594274)
chr1 (1-115)||(48598770-48598885)
chr1 (3-88)||(43756283-43756368)
chr1 (1-115)||(50164236-50164351)
chr1 (3-115)||(33631026-33631139)
chr1 (1-112)||(48153093-48153205)
chr1 (3-116)||(38328822-38328936)
chr1 (3-88)||(38469221-38469306)
chr1 (3-88)||(43755876-43755961)
chr1 (3-88)||(38468933-38469018)
chr1 (1-113)||(48589072-48589187)
chr1 (3-78)||(38328424-38328499)
chr1 (49-115)||(33630476-33630543)
chr1 (52-115)||(17151864-17151928)
[»] chr8 (10 HSPs)
chr8 (1-115)||(14197658-14197773)
chr8 (1-112)||(39440533-39440644)
chr8 (3-114)||(37657847-37657959)
chr8 (1-112)||(39439760-39439872)
chr8 (3-88)||(30846043-30846128)
chr8 (3-88)||(30846432-30846517)
chr8 (3-72)||(41714646-41714715)
chr8 (3-72)||(41715203-41715272)
chr8 (3-72)||(37658480-37658549)
chr8 (56-114)||(31408164-31408223)
[»] chr6 (15 HSPs)
chr6 (3-115)||(28983228-28983341)
chr6 (3-115)||(34717691-34717804)
chr6 (3-114)||(28982782-28982893)
chr6 (1-88)||(28535397-28535484)
chr6 (3-114)||(19062759-19062871)
chr6 (3-117)||(34717239-34717354)
chr6 (3-88)||(7635571-7635656)
chr6 (3-116)||(4348845-4348959)
chr6 (3-88)||(7635151-7635236)
chr6 (3-88)||(18290431-18290516)
chr6 (3-88)||(18290242-18290327)
chr6 (3-88)||(12999413-12999498)
chr6 (47-115)||(2924952-2925021)
chr6 (52-88)||(10608304-10608340)
chr6 (3-42)||(4349233-4349272)
[»] chr3 (27 HSPs)
chr3 (1-113)||(42257215-42257328)
chr3 (3-114)||(930369-930481)
chr3 (3-114)||(21166092-21166204)
chr3 (3-117)||(11442091-11442206)
chr3 (1-88)||(38000226-38000313)
chr3 (3-104)||(11441659-11441761)
chr3 (3-115)||(929910-930023)
chr3 (3-114)||(32473761-32473873)
chr3 (3-116)||(32474398-32474512)
chr3 (3-114)||(24394247-24394359)
chr3 (1-115)||(14788534-14788649)
chr3 (3-88)||(5113225-5113310)
chr3 (3-88)||(20586520-20586605)
chr3 (3-88)||(24394670-24394755)
chr3 (3-88)||(26006714-26006799)
chr3 (3-88)||(36992109-36992194)
chr3 (3-88)||(37017549-37017634)
chr3 (3-88)||(45000763-45000848)
chr3 (3-115)||(43521076-43521186)
chr3 (3-88)||(20586099-20586184)
chr3 (3-82)||(5113644-5113723)
chr3 (3-113)||(50766631-50766740)
chr3 (1-115)||(14788273-14788388)
chr3 (3-88)||(45000342-45000427)
chr3 (3-88)||(26006173-26006258)
chr3 (1-88)||(42257996-42258082)
chr3 (3-77)||(43104713-43104787)
[»] chr5 (16 HSPs)
chr5 (3-114)||(5620805-5620917)
chr5 (3-88)||(3595804-3595889)
chr5 (3-88)||(8321323-8321408)
chr5 (3-88)||(12330598-12330683)
chr5 (3-91)||(16996965-16997054)
chr5 (1-82)||(42655674-42655755)
chr5 (3-99)||(7858755-7858851)
chr5 (3-88)||(7858354-7858439)
chr5 (3-88)||(12330175-12330260)
chr5 (3-88)||(24027622-24027707)
chr5 (3-88)||(29759624-29759709)
chr5 (3-88)||(3596229-3596314)
chr5 (3-88)||(8320902-8320987)
chr5 (3-88)||(24027214-24027299)
chr5 (51-88)||(31078483-31078520)
chr5 (53-87)||(42654864-42654898)
[»] scaffold0095 (1 HSPs)
scaffold0095 (1-112)||(42866-42977)
[»] chr2 (16 HSPs)
chr2 (3-120)||(3705760-3705880)
chr2 (3-114)||(3705337-3705449)
chr2 (3-88)||(7994509-7994594)
chr2 (3-88)||(30899417-30899502)
chr2 (3-114)||(16681566-16681678)
chr2 (3-88)||(6609979-6610064)
chr2 (3-88)||(7994082-7994167)
chr2 (3-88)||(15561976-15562061)
chr2 (3-88)||(16903833-16903918)
chr2 (3-81)||(16992327-16992405)
chr2 (3-88)||(15561568-15561653)
chr2 (3-88)||(16903425-16903509)
chr2 (3-88)||(6609578-6609663)
chr2 (3-88)||(30899837-30899922)
chr2 (16-88)||(37996532-37996604)
chr2 (14-72)||(16682213-16682271)
[»] chr4 (18 HSPs)
chr4 (3-115)||(19860808-19860921)
chr4 (3-116)||(6934438-6934552)
chr4 (3-88)||(20174997-20175082)
chr4 (3-114)||(19860330-19860442)
chr4 (3-120)||(6933815-6933933)
chr4 (3-88)||(5235401-5235486)
chr4 (3-115)||(5235822-5235935)
chr4 (1-117)||(5259262-5259379)
chr4 (1-112)||(52532125-52532237)
chr4 (1-115)||(52532364-52532479)
chr4 (3-115)||(30213851-30213964)
chr4 (52-88)||(12590187-12590223)
chr4 (3-63)||(20175361-20175421)
chr4 (49-88)||(46764280-46764319)
chr4 (52-88)||(11680304-11680340)
chr4 (52-88)||(11688583-11688619)
chr4 (52-88)||(25655623-25655659)
chr4 (49-88)||(31910582-31910621)
[»] scaffold0508 (2 HSPs)
scaffold0508 (3-88)||(4160-4245)
scaffold0508 (3-88)||(4560-4645)
[»] scaffold0022 (2 HSPs)
scaffold0022 (3-88)||(61601-61686)
scaffold0022 (3-69)||(62023-62089)
[»] scaffold0006 (1 HSPs)
scaffold0006 (3-88)||(202219-202304)
[»] scaffold0136 (1 HSPs)
scaffold0136 (44-88)||(22203-22247)


Alignment Details
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 33140230 - 33140342
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttccat 101  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||| ||| ||||    
T  33140230 aaaatctagtgatgagggagtatgataaggatgtgttcttagtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtaactttcccat 33140329  T
Q  102 actaaacctcacc 114  Q
    |||||||||||||    
T  33140330 actaaacctcacc 33140342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 20559858 - 20559773
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20559858 aaaatctagtgatgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 20559773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 20560217 - 20560331
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttccat 101  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||  ||  ||| ||||    
T  20560217 aaaatctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaatatagctttcccat 20560316  T
Q  102 actaaacctcacctg 116  Q
     ||||||||||||||    
T  20560317 gctaaacctcacctg 20560331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 42901070 - 42901187
Alignment:
Q  1 agaaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttcc 99  Q
    ||||||||||||||||||| ||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||  |||| |    
T  42901070 agaaaatctagtgatgagggagtatgataacaatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaaatagctttttc 42901169  T
Q  100 atactaaacctcacctga 117  Q
    || |||||||||||||||    
T  42901170 atgctaaacctcacctga 42901187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 114
Target Start/End: Complemental strand, 33139886 - 33139774
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaa-aaaagtaatttttccat 101  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||| |||||||  ||| ||||    
T  33139886 aaaatctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaaccaactttctcatggtggaaaaaaagtagctttcccat 33139787  T
Q  102 actaaacctcacc 114  Q
     ||||||||||||    
T  33139786 gctaaacctcacc 33139774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 4180274 - 4180388
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttccat 101  Q
    ||||||||||||||||| |||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||| |||  ||||||||    
T  4180274 aaaatctagtgatgagggagtatggtaaggatgtgttcttagtttgatctaatggtcaaaaactaactttcccatggtgggaaaaatgtagcttttccat 4180373  T
Q  102 actaaacctcacctg 116  Q
      |||||||||||||    
T  4180374 gttaaacctcacctg 4180388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 3 - 114
Target Start/End: Complemental strand, 4179749 - 4179637
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttccat 101  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| || ||||  |||    
T  4179749 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggtcaaatactaactttcccatggtgggaaaaaaatagttttctcat 4179650  T
Q  102 actaaacctcacc 114  Q
     ||||||||||||    
T  4179649 gctaaacctcacc 4179637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 3 - 114
Target Start/End: Complemental strand, 40640762 - 40640653
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaagtaatttttccata 102  Q
    ||||||||||||||||| || ||||||| ||||||||||||||||||||||||| | |||||||||||||||| ||  |||||||||||||||| ||||     
T  40640762 aaaatctagtgatgagggagaatgataatgatgtgttcttggtttgatttaatgattaaaaactaactttcccgtg--ggaaaaaagtaattttcccatg 40640665  T
Q  103 ctaaacctcacc 114  Q
    ||||||||||||    
T  40640664 ctaaacctcacc 40640653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 42900761 - 42900647
Alignment:
Q  1 agaaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtg-gaaaaaagtaatttttcc 99  Q
    ||||||| |||||||||   ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||  |||||||||  ||||||    
T  42900761 agaaaatttagtgatgaacgagtatgataaggatgtgttcttgatttgatctaatggtcaaaaactaactttcccatggtgaaaaaaaagtaccttttcc 42900662  T
Q  100 atactaaacctcacc 114  Q
    || ||||||||||||    
T  42900661 atgctaaacctcacc 42900647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 30414293 - 30414208
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||    
T  30414293 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 30414208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 40641106 - 40641218
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttccat 101  Q
    ||||||||||||| ||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||   |||||||||| ||| ||||    
T  40641106 aaaatctagtgataagggagtatgataaggatgtgttcttgatttgatctaatggtcaaaaactaactttcccatagtaaaaaaaaagtaactttcccat 40641205  T
Q  102 actaaacctcacc 114  Q
     ||||||||||||    
T  40641206 gctaaacctcacc 40641218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 35212016 - 35211929
Alignment:
Q  1 agaaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    |||||||||| |||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||| || |||||||    
T  35212016 agaaaatctaatgatgatgaagtatgataagaatgtgttcttgatttgatttaatggtcaaaaactaacttttccatagtagaaaaaa 35211929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 25137524 - 25137439
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||| |||||| |||||||||||| ||| |||||| ||||||| ||||||||||||||||||||||| |||||    
T  25137524 aaaatctagtgatgagggagtatggtaaggatgtgttattgatttgatctaatggttaaaaactaactttcccatggtgggaaaaa 25137439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 25137860 - 25137946
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttc-ttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||| |||||| ||||||||||||| ||| |||||| ||||||| ||||||||| ||||||||||||| |||||    
T  25137860 aaaatctagtgatgagggagtatggtaaggatgtgttctttgatttgatctaatggttaaaaactaattttcccatggtgggaaaaa 25137946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 88
Target Start/End: Complemental strand, 29314644 - 29314609
Alignment:
Q  53 aatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    |||||| |||||||||||||||||||||||||||||    
T  29314644 aatggttaaaaactaactttcccatggtggaaaaaa 29314609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 29006411 - 29006375
Alignment:
Q  52 taatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  29006411 taatggttaaaaactaactttcccatggtgggaaaaa 29006375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 29007183 - 29007219
Alignment:
Q  52 taatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  29007183 taatggttaaaaactaactttcccatggtgggaaaaa 29007219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 12800406 - 12800518
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttccat 101  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||| ||||    
T  12800406 aaaatctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagttttcccat 12800505  T
Q  102 actaaacctcacc 114  Q
     ||||||||||||    
T  12800506 gctaaacctcacc 12800518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 3 - 119
Target Start/End: Complemental strand, 12800101 - 12799984
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttccat 101  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| | |||||||||  ||| ||||    
T  12800101 aaaatctagtgatgaggaagtatgataaggatgtgtttttggtttgatctaatggtcaaaaactaactttcccatggtagaaaaaaagtagctttcccat 12800002  T
Q  102 actaaacctcacctgatt 119  Q
    ||||||||||||| ||||    
T  12800001 actaaacctcaccagatt 12799984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 2821425 - 2821537
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttccat 101  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||| ||||  |||    
T  2821425 aaaatctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaattaactttcccatggtgggaaaaaagtagttttctcat 2821524  T
Q  102 actaaacctcacc 114  Q
    |||||||||||||    
T  2821525 actaaacctcacc 2821537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 2821070 - 2820956
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttccat 101  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||  ||| ||||    
T  2821070 aaaatctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagctttcccat 2820971  T
Q  102 actaaacctcacctg 116  Q
      |||||||||||||    
T  2820970 gttaaacctcacctg 2820956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 28371637 - 28371751
Alignment:
Q  1 agaaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttcc 99  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||  ||| ||    
T  28371637 agaaaatctagtgatgagggagtatgataaggatgtgtttttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagctttccc 28371736  T
Q  100 atactaaacctcacc 114  Q
    || ||||||||||||    
T  28371737 atgctaaacctcacc 28371751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 50164643 - 50164757
Alignment:
Q  1 agaaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgg-aaaaaagtaatttttcc 99  Q
    ||||||||||||||||| | ||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||| ||||||||| |||| ||    
T  50164643 agaaaatctagtgatgaaggagtatgataaggatgtgttcttgatttgatctaatggtcaaaaactaactttcctatggtggaaaaaaagtagttttccc 50164742  T
Q  100 atactaaacctcacc 114  Q
    |||||||||||||||    
T  50164743 atactaaacctcacc 50164757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 28371313 - 28371198
Alignment:
Q  1 agaaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttcc 99  Q
    ||||||||||||||||||  |||||||||| ||||||||||||||||||| |||||||||||||||||||||  |||||| |||||||||||| ||| ||    
T  28371313 agaaaatctagtgatgagagagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttttcatggtaggaaaaaagtaactttccc 28371214  T
Q  100 atactaaacctcacct 115  Q
    ||||||||||||||||    
T  28371213 atactaaacctcacct 28371198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 48594159 - 48594274
Alignment:
Q  1 agaaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttcc 99  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||  ||| |     
T  48594159 agaaaatctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatgatgggaaaaaagtagctttcca 48594258  T
Q  100 atactaaacctcacct 115  Q
    || |||||||||||||    
T  48594259 atgctaaacctcacct 48594274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 48598770 - 48598885
Alignment:
Q  1 agaaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttcc 99  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||  ||| |     
T  48598770 agaaaatctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatgatgggaaaaaagtagctttcca 48598869  T
Q  100 atactaaacctcacct 115  Q
    || |||||||||||||    
T  48598870 atgctaaacctcacct 48598885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 43756283 - 43756368
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  43756283 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatttaatggttaaaaactaactttcccatggtggaaaaaa 43756368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 50164351 - 50164236
Alignment:
Q  1 agaaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttcc 99  Q
    |||||||||||| |||||| |||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||| || ||||||||||| |||| ||    
T  50164351 agaaaatctagtaatgagggagtatgataaggatgtattcttggtttgatctaatggtcataaactaactttcccatagtgggaaaaaagtagttttccc 50164252  T
Q  100 atactaaacctcacct 115  Q
    || |||||||||||||    
T  50164251 atgctaaacctcacct 50164236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 115
Target Start/End: Original strand, 33631026 - 33631139
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttccat 101  Q
    ||||||||||||||||| |||||| ||||||||||||||| ||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||| ||||    
T  33631026 aaaatctagtgatgagggagtatggtaaggatgtgttcttcgtttgatctaatggtcaaaaactaattttcccatggtgggaaaaaagtagttttcccat 33631125  T
Q  102 actaaacctcacct 115  Q
     ||||| |||||||    
T  33631126 gctaaatctcacct 33631139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 48153093 - 48153205
Alignment:
Q  1 agaaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttcc 99  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||  | |||||||||||  ||| ||    
T  48153093 agaaaatctagtgatgaaggagtatgataaggatgtgttcttggtttgatctaatgatcaaaaactaactttcccatattgggaaaaaagtagctttccc 48153192  T
Q  100 atactaaacctca 112  Q
    || ||||||||||    
T  48153193 atgctaaacctca 48153205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 38328822 - 38328936
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaagtaat-ttttccat 101  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||| ||| ||||| || | ||| ||||    
T  38328822 aaaatctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatgattaaaaactaactttcccatgatgggaaaaattagtctttcccat 38328921  T
Q  102 actaaacctcacctg 116  Q
     |||||| |||||||    
T  38328922 gctaaacttcacctg 38328936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 38469221 - 38469306
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||| | |||||| |||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||    
T  38469221 aaaatctagtgatgatggagtatggtaaggatgtgttcttgatttgatctaatggttaaaaactaactttcccatggtggaaaaaa 38469306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 43755961 - 43755876
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    |||||||| |||||||| |||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||    
T  43755961 aaaatctaatgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 43755876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 38469018 - 38468933
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||| |||||| |||||||||||||||| ||| || ||||||| ||||||||||||||||||||||| |||||    
T  38469018 aaaatctagtgatgagggagtatggtaaggatgtgttcttgatttaatataatggttaaaaactaactttcccatggtgggaaaaa 38468933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 48589072 - 48589187
Alignment:
Q  1 agaaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgg---aaaaaagtaattttt 97  Q
    ||||||||||||||| | ||||||||||||||||||||||||| |||||| |||| ||| |||||||| ||||||||||| |   ||||||||| ||||     
T  48589072 agaaaatctagtgattatgaagtatgataaggatgtgttcttgatttgatctaatcgtcgaaaactaattttcccatggtagaaaaaaaaagtagttttc 48589171  T
Q  98 ccatactaaacctcac 113  Q
    |||| |||||||||||    
T  48589172 ccatgctaaacctcac 48589187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 38328499 - 38328424
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatg 78  Q
    ||||||||||||||||| |||||| ||||||| ||||||||||||||| ||||||| ||||||||||||| |||||    
T  38328499 aaaatctagtgatgagggagtatggtaaggatttgttcttggtttgatctaatggttaaaaactaacttttccatg 38328424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 115
Target Start/End: Complemental strand, 33630543 - 33630476
Alignment:
Q  49 atttaatggtcaaaaactaactttcccatggtggaaaa-aagtaatttttccatactaaacctcacct 115  Q
    |||||||||||||||||||||||||||||||||||||| |||||  ||| |||| |||||||||||||    
T  33630543 atttaatggtcaaaaactaactttcccatggtggaaaataagtagctttcccatgctaaacctcacct 33630476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 17151864 - 17151928
Alignment:
Q  52 taatggtcaaaaactaactttcccatggtgg-aaaaaagtaatttttccatactaaacctcacct 115  Q
    ||||||||||||||||||||||||||||||| |||||||||  ||| |||| |||||||||||||    
T  17151864 taatggtcaaaaactaactttcccatggtggaaaaaaagtagctttcccatgctaaacctcacct 17151928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 14197773 - 14197658
Alignment:
Q  1 agaaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttcc 99  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||| ||| ||    
T  14197773 agaaaatctagtgatgagggagtatgataaggatgtgttcttgctttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtaactttccc 14197674  T
Q  100 atactaaacctcacct 115  Q
    || |||||||||||||    
T  14197673 atgctaaacctcacct 14197658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 39440533 - 39440644
Alignment:
Q  1 agaaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaagtaatttttcca 100  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||| ||||  ||    
T  39440533 agaaaatctagtgatgagggagtattataaggatgtgttcttggtttgatttaatggtcaaaaactaacttttttatggtggaaaaaagtagttttctca 39440632  T
Q  101 tactaaacctca 112  Q
    | ||||||||||    
T  39440633 tgctaaacctca 39440644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 114
Target Start/End: Complemental strand, 37657959 - 37657847
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttccat 101  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||  ||| ||||    
T  37657959 aaaatctagtgatgagggagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtagaaaaaaagtagctttcccat 37657860  T
Q  102 actaaacctcacc 114  Q
     ||||||||||||    
T  37657859 gctaaacctcacc 37657847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 39439872 - 39439760
Alignment:
Q  1 agaaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttcc 99  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||| | ||| | |||||||||||  ||||||    
T  39439872 agaaaatctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatagtcaaaaactaacttttctatgatgggaaaaaagtagcttttcc 39439773  T
Q  100 atactaaacctca 112  Q
    |||||||||||||    
T  39439772 atactaaacctca 39439760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 30846128 - 30846043
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||| |||||    
T  30846128 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcctatggtgggaaaaa 30846043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 30846432 - 30846517
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||| |||||| ||||||| ||||||||||||||| ||||||| ||||||||| |||||||||||||||||||    
T  30846432 aaaatctagtgatgagggagtatggtaaggatatgttcttggtttgatctaatggttaaaaactaattttcccatggtggaaaaaa 30846517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 41714715 - 41714646
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaacttt 72  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  41714715 aaaatctagtgatgagggattatgataaggatgtgttcttggtttgatctaatgatcaaaaactaacttt 41714646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 41715203 - 41715272
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaacttt 72  Q
    ||||||||||||||| | |||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  41715203 aaaatctagtgatgatggagtatgataaggatatgttcttggtttgatctaatggtcaaaaactaacttt 41715272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 37658480 - 37658549
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaacttt 72  Q
    |||||||||| |||| | |||||| |||||| |||||||| ||||||| ||||||| |||||||||||||    
T  37658480 aaaatctagtaatgaaggagtatggtaaggacgtgttcttcgtttgatctaatggtaaaaaactaacttt 37658549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 31408164 - 31408223
Alignment:
Q  56 ggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttccatactaaacctcacc 114  Q
    ||||||||||||||||||||||||| |||||||||||  ||| |||| ||||||||||||    
T  31408164 ggtcaaaaactaactttcccatggtgggaaaaaagtagctttcccatgctaaacctcacc 31408223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 7e-39; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 3 - 115
Target Start/End: Original strand, 28983228 - 28983341
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttccat 101  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||  ||| ||||    
T  28983228 aaaatctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagctttcccat 28983327  T
Q  102 actaaacctcacct 115  Q
     |||||||||||||    
T  28983328 gctaaacctcacct 28983341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 3 - 115
Target Start/End: Original strand, 34717691 - 34717804
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttccat 101  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||  ||| ||||    
T  34717691 aaaatctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagctttcccat 34717790  T
Q  102 actaaacctcacct 115  Q
     |||||||||||||    
T  34717791 gctaaacctcacct 34717804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 114
Target Start/End: Complemental strand, 28982893 - 28982782
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaagtaatttttccata 102  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| | |||||||||| |||| ||||     
T  28982893 aaaatctagtgatgagggagtatgataaggatgtgttcttggtttgatcgaatggtcaaaaactaactttcccatgatagaaaaaagtagttttcccatg 28982794  T
Q  103 ctaaacctcacc 114  Q
    ||||||||||||    
T  28982793 ctaaacctcacc 28982782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 28535397 - 28535484
Alignment:
Q  1 agaaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  28535397 agaaaatataatgatgaggaagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcctatggtggaaaaaa 28535484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 19062759 - 19062871
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttccat 101  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||| |||||||||||  ||| ||||    
T  19062759 aaaatctagtgatgagggagtatgataaggatgtgtttttggtttgatctaatggtcaaaaactaactttctcatggtgggaaaaaagtagctttcccat 19062858  T
Q  102 actaaacctcacc 114  Q
     ||||| ||||||    
T  19062859 gctaaagctcacc 19062871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 34717354 - 34717239
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttccat 101  Q
    ||||||||||||||||  ||||||||||||| ||||||||| |||||| ||||| ||||||||||||||||||||||| |||||||||||  ||| ||||    
T  34717354 aaaatctagtgatgagagagtatgataaggacgtgttcttgatttgatctaatgatcaaaaactaactttcccatggtgggaaaaaagtagctttcccat 34717255  T
Q  102 actaaacctcacctga 117  Q
     |||||||||||||||    
T  34717254 gctaaacctcacctga 34717239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 7635571 - 7635656
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||    
T  7635571 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 7635656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 4348959 - 4348845
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaagtaatttttc-cat 101  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||| |||||| |||||||  ||||||||||||| |||| |||| |||    
T  4348959 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaacaaactttcttatggtggaaaaaattaatctttctcat 4348860  T
Q  102 actaaacctcacctg 116  Q
     |||||| |||||||    
T  4348859 gctaaacttcacctg 4348845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 7635236 - 7635151
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||| |||||| ||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||| |||||    
T  7635236 aaaatctagtgatgagggagtatggtaaggatgtgttcttagtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 7635151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 18290431 - 18290516
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||| |||||| ||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||| |||||    
T  18290431 aaaatctagtgatgagggagtatggtaaggatttgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 18290516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 18290327 - 18290242
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||| |||||| ||||||| ||||||||||||||| ||||||| ||||| ||||||||||||||||| |||||    
T  18290327 aaaatctagtgatgagggagtatggtaaggatttgttcttggtttgatctaatggttaaaaattaactttcccatggtgggaaaaa 18290242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 12999413 - 12999498
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    |||||||| || ||||| |||||| ||||||| ||||||||||||||| ||||||| |||||||||||| | |||||||| |||||    
T  12999413 aaaatctaatggtgagggagtatggtaaggatatgttcttggtttgatctaatggttaaaaactaacttgctcatggtgggaaaaa 12999498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 2924952 - 2925021
Alignment:
Q  47 tgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttccatactaaacctcacct 115  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||  ||| |||| |||||||||||||    
T  2924952 tgatctaatggtcaaaaactaactttcctatggtgggaaaaaagtagctttcccatgctaaacctcacct 2925021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 10608304 - 10608340
Alignment:
Q  52 taatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||||||||||||||||| |||||    
T  10608304 taatggtcaaaaactaactttcccatggtgggaaaaa 10608340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 4349233 - 4349272
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttctt 42  Q
    ||||||||||||||||| |||||| |||||||||||||||    
T  4349233 aaaatctagtgatgagggagtatggtaaggatgtgttctt 4349272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 7e-39; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 42257328 - 42257215
Alignment:
Q  1 agaaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttcc 99  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||| ||    
T  42257328 agaaaatctagtgatgagggagtatgataaagatgtgttcttggtttgatttaatggtcaaaaactaacttttccatggtgggaaaaaagtagttttccc 42257229  T
Q  100 atactaaacctcac 113  Q
    || |||||||||||    
T  42257228 atgctaaacctcac 42257215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 930369 - 930481
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttccat 101  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||  ||| ||||    
T  930369 aaaatctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagctttcccat 930468  T
Q  102 actaaacctcacc 114  Q
     ||||||||||||    
T  930469 gctaaacctcacc 930481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 21166092 - 21166204
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttccat 101  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||| ||| ||||    
T  21166092 aaaatctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaattttcccatggtgggaaaaaagtaactttcccat 21166191  T
Q  102 actaaacctcacc 114  Q
     ||||||||||||    
T  21166192 gctaaacctcacc 21166204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 117
Target Start/End: Original strand, 11442091 - 11442206
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttccat 101  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||  ||| ||||    
T  11442091 aaaatctagtgatgagggagtatgataaggatgtgttctttgtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagctttcccat 11442190  T
Q  102 actaaacctcacctga 117  Q
     |||||||||||||||    
T  11442191 gctaaacctcacctga 11442206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 38000226 - 38000313
Alignment:
Q  1 agaaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||    
T  38000226 agaaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaacttttccatggtgggaaaaa 38000313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 11441761 - 11441659
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtg-gaaaaaagtaatttttccat 101  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||| ||| ||||    
T  11441761 aaaatctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgaaaaaaaagtaactttcccat 11441662  T
Q  102 act 104  Q
    |||    
T  11441661 act 11441659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 3 - 115
Target Start/End: Complemental strand, 930023 - 929910
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttccat 101  Q
    |||||||||||||| || ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||  ||| ||||    
T  930023 aaaatctagtgatgggggagtatgataaggatgtgttattggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagatttcccat 929924  T
Q  102 actaaacctcacct 115  Q
     |||||||||||||    
T  929923 gctaaacctcacct 929910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 114
Target Start/End: Complemental strand, 32473873 - 32473761
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttccat 101  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||  ||| ||||    
T  32473873 aaaatctagtgatgagggagtataataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatagtgggaaaaaagtagctttcccat 32473774  T
Q  102 actaaacctcacc 114  Q
     ||||||||||||    
T  32473773 gctaaacctcacc 32473761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 32474398 - 32474512
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttccat 101  Q
    ||||||||||||||||| |||||| |||||||| |||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||  ||| ||||    
T  32474398 aaaatctagtgatgagggagtatggtaaggatgcgttcttcgtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagctttcccat 32474497  T
Q  102 actaaacctcacctg 116  Q
     ||||||||||||||    
T  32474498 gctaaacctcacctg 32474512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 3 - 114
Target Start/End: Complemental strand, 24394359 - 24394247
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaagtaat-ttttccat 101  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||| || | ||| ||||    
T  24394359 aaaatctagtgatgagggagtatgctaaggatgtgttcttggtttgatctaatggttaaaaactaactttcctatggtggaaaaaattagtctttcccat 24394260  T
Q  102 actaaacctcacc 114  Q
    ||||||| |||||    
T  24394259 actaaacttcacc 24394247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 14788534 - 14788649
Alignment:
Q  1 agaaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttcc 99  Q
    ||||||||||| ||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||| | |||||||||||  ||| ||    
T  14788534 agaaaatctagcgatgaggaagtatgataagaatgtcttcttggtttgatctaatggtcaaaaactaactttcccatgataggaaaaaagtagctttccc 14788633  T
Q  100 atactaaacctcacct 115  Q
    ||  ||||||||||||    
T  14788634 atgttaaacctcacct 14788649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 5113310 - 5113225
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||    
T  5113310 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 5113225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 20586520 - 20586605
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||    
T  20586520 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 20586605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 24394670 - 24394755
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||    
T  24394670 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 24394755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 26006714 - 26006799
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||| |||||    
T  26006714 aaaatctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttctcatgatgggaaaaa 26006799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 36992109 - 36992194
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||    
T  36992109 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 36992194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 37017549 - 37017634
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||    
T  37017549 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 37017634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 45000763 - 45000848
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||    
T  45000763 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 45000848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 115
Target Start/End: Complemental strand, 43521186 - 43521076
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttccat 101  Q
    ||||||||||||||||| ||||||||||||||||||    |||||||| ||||||||||||||||||||||||||||| |||||||||||  ||| ||||    
T  43521186 aaaatctagtgatgagggagtatgataaggatgtgta---ggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagctttcccat 43521090  T
Q  102 actaaacctcacct 115  Q
     |||||||||||||    
T  43521089 gctaaacctcacct 43521076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 20586184 - 20586099
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||| |||||| |||||||||||||||| |||||| ||||||| ||||||||||||||||||||||| |||||    
T  20586184 aaaatctagtgatgagggagtatggtaaggatgtgttcttgatttgatctaatggttaaaaactaactttcccatggtgggaaaaa 20586099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 5113644 - 5113723
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgg 82  Q
    ||||||||||||||||| |||||| ||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||    
T  5113644 aaaatctagtgatgagggagtatggtaaggatgtattcttggtttgatctaatggttaaaaactaactttcccatggtgg 5113723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 50766740 - 50766631
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttccat 101  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||| ||||||| ||||||| |||||||||||  ||| ||||    
T  50766740 aaaatctagtgatgagga-gtatgataagaatgtgttcttggtttgatctaatggtcaaaaattaacttt-ccatggtgggaaaaaagtagctttcccat 50766643  T
Q  102 actaaacctcac 113  Q
     |||||||||||    
T  50766642 gctaaacctcac 50766631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 14788388 - 14788273
Alignment:
Q  1 agaaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgg--aaaaaagtaatttttc 98  Q
    ||||||| ||||||||||| |||||||||| ||||||||||||||||| | |||||||||||||||||||||  ||||||||  |||||||||  ||| |    
T  14788388 agaaaatttagtgatgagggagtatgataaagatgtgttcttggtttgttctaatggtcaaaaactaacttt-tcatggtgggaaaaaaagtagatttcc 14788290  T
Q  99 catactaaacctcacct 115  Q
    ||| |||||||||||||    
T  14788289 catgctaaacctcacct 14788273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 45000427 - 45000342
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||| |||||| |||||||||||||||| |||||| ||||||| |||||||||||||||||| |||| |||||    
T  45000427 aaaatctagtgatgagggagtatggtaaggatgtgttcttgatttgatctaatggttaaaaactaactttcccatagtgggaaaaa 45000342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 26006258 - 26006173
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||| | |||||| |||||||||||| || ||||||| ||||||| ||||||||||||||||||||||| |||||    
T  26006258 aaaatctagtgatgaaggagtatggtaaggatgtgttattagtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 26006173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 42257996 - 42258082
Alignment:
Q  1 agaaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||||| ||||||||||| ||||||| ||| |||||| ||||||||||||||||||||||| ||| ||| |||||    
T  42257996 agaaaatctagtgatgagggagtatgataag-atgtgttattgatttgatctaatggtcaaaaactaactttccaatgatgggaaaaa 42258082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 43104713 - 43104787
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccat 77  Q
    |||||||| |||||||| |||||| ||| ||||||||||| ||||||| ||||||| ||||||||||||||||||    
T  43104713 aaaatctaatgatgagggagtatggtaaagatgtgttcttcgtttgatctaatggttaaaaactaactttcccat 43104787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 5620805 - 5620917
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttccat 101  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||| ||| ||||    
T  5620805 aaaatctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaattttcccatggtgggaaaaaagtaactttcccat 5620904  T
Q  102 actaaacctcacc 114  Q
     ||||||||||||    
T  5620905 gctaaacctcacc 5620917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 3595889 - 3595804
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||    
T  3595889 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 3595804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 8321323 - 8321408
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||    
T  8321323 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 8321408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 12330598 - 12330683
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||    
T  12330598 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 12330683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 16996965 - 16997054
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagta 91  Q
    ||||||||||||||||| |||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  16996965 aaaatctagtgatgagggagtatggtaaggatgtgttcttcgtttgatctaatggtcaaaaactaactttcccatggtaggaaaaaagta 16997054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 42655674 - 42655755
Alignment:
Q  1 agaaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgg 82  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||| |||||||||    
T  42655674 agaaaatctagtgatgaggaagtatgataaggatgtgttattggtttgatctaatggtcaaaaactaatttttccatggtgg 42655755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 7858755 - 7858851
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaagtaatttttcc 99  Q
    ||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||  |||||| |||| |||||    
T  7858755 aaaatctagtgatgagggagtatggtaaggatgtattcttggtttgatttaatggttaaaaactaactttcccatggtaaaaaaaattaatctttcc 7858851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 7858439 - 7858354
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    |||||||| |||||||| |||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||    
T  7858439 aaaatctaatgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 7858354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 12330260 - 12330175
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||| |||||    
T  12330260 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaattaactttcccatggtgggaaaaa 12330175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 24027622 - 24027707
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||| |||||    
T  24027622 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatgatgggaaaaa 24027707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 29759709 - 29759624
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    |||||||||||||| || |||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||    
T  29759709 aaaatctagtgatgggggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatagtggaaaaaa 29759624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 3596229 - 3596314
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||| |||||  ||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||| |||||    
T  3596229 aaaatctagtgatgagggagtatagtaaggatgtgttcttggtttgatctaatggttaaaaactaattttcccatggtgggaaaaa 3596314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 8320987 - 8320902
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||| |||||| |||||||||||| ||||||| || ||||||| ||||||||||||||||||||||| |||||    
T  8320987 aaaatctagtgatgagggagtatggtaaggatgtgttattggtttaatctaatggttaaaaactaactttcccatggtgggaaaaa 8320902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 24027299 - 24027214
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||| |||| || ||||||||||||| ||||||||| |||||    
T  24027299 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatagttaaaaactaacttttccatggtgggaaaaa 24027214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 88
Target Start/End: Complemental strand, 31078520 - 31078483
Alignment:
Q  51 ttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    |||||||| |||||||||||||||||||||||||||||    
T  31078520 ttaatggttaaaaactaactttcccatggtggaaaaaa 31078483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 42654898 - 42654864
Alignment:
Q  53 aatggtcaaaaactaactttcccatggtggaaaaa 87  Q
    |||||| ||||||||||||||||||||||||||||    
T  42654898 aatggttaaaaactaactttcccatggtggaaaaa 42654864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 42866 - 42977
Alignment:
Q  1 agaaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaagtaatttttcca 100  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||| ||||  ||    
T  42866 agaaaatctagtgatgagggagtattataaggatgtgttcttggtttgatttaatggtcaaaaactaacttttttatggtggaaaaaagtagttttctca 42965  T
Q  101 tactaaacctca 112  Q
    | ||||||||||    
T  42966 tgctaaacctca 42977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 120
Target Start/End: Original strand, 3705760 - 3705880
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtgg---aaaaaagtaatttttcc 99  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||   ||||||||| | || ||    
T  3705760 aaaatctagtgatgaaggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtggaaaaaaaaagtagtcttccc 3705859  T
Q  100 atactaaacctcacctgattt 120  Q
    || ||||||||||||| ||||    
T  3705860 atgctaaacctcacctaattt 3705880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 114
Target Start/End: Complemental strand, 3705449 - 3705337
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttccat 101  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||  ||| | ||    
T  3705449 aaaatctagtgatgagggagtatgatatggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagctttcctat 3705350  T
Q  102 actaaacctcacc 114  Q
     ||||||||||||    
T  3705349 gctaaacctcacc 3705337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 7994509 - 7994594
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||| ||||||| |||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  7994509 aaaatctagcgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggaaaaaa 7994594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 30899502 - 30899417
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||    
T  30899502 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 30899417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 114
Target Start/End: Complemental strand, 16681678 - 16681566
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttccat 101  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| | ||||| || ||  ||| ||||    
T  16681678 aaaatctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggccaaaaactaactttcccatgatgggaaataactagctttcccat 16681579  T
Q  102 actaaacctcacc 114  Q
     ||||||||||||    
T  16681578 gctaaacctcacc 16681566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 6609979 - 6610064
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||| |||||| |||||||||||||||||||| || ||||||| ||||||||||||||||||||||| |||||    
T  6609979 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttaatctaatggttaaaaactaactttcccatggtgggaaaaa 6610064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 7994167 - 7994082
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||| |||||    
T  7994167 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatgatgggaaaaa 7994082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 15561976 - 15562061
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||| |||||| |||||||||||||||||||| || ||||||| ||||||||||||||||||||||| |||||    
T  15561976 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttaatctaatggttaaaaactaactttcccatggtgggaaaaa 15562061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 16903833 - 16903918
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||| |||||| ||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||| |||||    
T  16903833 aaaatctagtgatgagggagtatggtaaggatgtgttcttagtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 16903918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 16992327 - 16992405
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtg 81  Q
    ||||||||||||||||| |||||| ||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||    
T  16992327 aaaatctagtgatgagggagtatggtaaggatgtgttcttagtttgatctaatggttaaaaactaactttcccatggtg 16992405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 15561653 - 15561568
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||| |||||| ||||||||||||||| ||||||| ||||||| ||||||||||||||| ||||||| |||||    
T  15561653 aaaatctagtgatgagggagtatggtaaggatgtgttcttagtttgatctaatggttaaaaactaactttccaatggtgggaaaaa 15561568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 16903509 - 16903425
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||| |||||| ||||||||||||||| ||||||| ||||||| ||||||||||||| ||||||||| |||||    
T  16903509 aaaatctagtgatgagggagtatggtaaggatgtgttctt-gtttgatctaatggttaaaaactaacttttccatggtgggaaaaa 16903425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 6609663 - 6609578
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    |||||||||||| |||| |||||| |||||||||||| ||||||| || ||||||| ||||||||||||| ||||||||| |||||    
T  6609663 aaaatctagtgaagagggagtatggtaaggatgtgttgttggtttcatctaatggttaaaaactaacttttccatggtgggaaaaa 6609578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 30899837 - 30899922
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    |||||||| |||||||| |||||| ||||||||||||||||||||||| |||| || |||||||||||||  |||||||| |||||    
T  30899837 aaaatctaatgatgagggagtatggtaaggatgtgttcttggtttgatctaatagttaaaaactaactttttcatggtgggaaaaa 30899922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 37996532 - 37996604
Alignment:
Q  16 gaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    |||| ||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||| ||| |||||    
T  37996532 gagggagtatgataaggatgtgttcttgatttgatctaatggttaaaaactaactttcccatgatgggaaaaa 37996604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 16682213 - 16682271
Alignment:
Q  14 atgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaacttt 72  Q
    |||||| |||||| ||  ||||||||||| |||||||||||| ||||||||||||||||    
T  16682213 atgagggagtatggtatagatgtgttcttcgtttgatttaatagtcaaaaactaacttt 16682271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 3 - 115
Target Start/End: Original strand, 19860808 - 19860921
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttccat 101  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||  ||| ||||    
T  19860808 aaaatctagtgatgagggagtatgaaaaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccacggtgggaaaaaagtaggtttcccat 19860907  T
Q  102 actaaacctcacct 115  Q
     |||||||||||||    
T  19860908 gctaaacctcacct 19860921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 6934438 - 6934552
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaagtaat-ttttccat 101  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| || | ||| ||||    
T  6934438 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggaaaaaattagtctttcccat 6934537  T
Q  102 actaaacctcacctg 116  Q
     |||||| |||||||    
T  6934538 gctaaacttcacctg 6934552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 20175082 - 20174997
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||    
T  20175082 aaaatctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 20174997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 3 - 114
Target Start/End: Complemental strand, 19860442 - 19860330
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttccat 101  Q
    ||||||||||||||||| |||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||  ||| ||||    
T  19860442 aaaatctagtgatgagggagtatggtaagtatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaaatagctttcccat 19860343  T
Q  102 actaaacctcacc 114  Q
     ||||||||||||    
T  19860342 gctaaacctcacc 19860330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 3 - 120
Target Start/End: Complemental strand, 6933933 - 6933815
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaagtaat-ttttccat 101  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||| ||||||||||||| ||||| ||||||||| || | ||| ||||    
T  6933933 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaacttttccatgatggaaaaaattagtctttcccat 6933834  T
Q  102 actaaacctcacctgattt 120  Q
     |||||| |||||||||||    
T  6933833 gctaaacttcacctgattt 6933815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 5235486 - 5235401
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||    
T  5235486 aaaatctagtgatgagtgagtatgataaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 5235401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 115
Target Start/End: Original strand, 5235822 - 5235935
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaagtaattttt-ccat 101  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||| ||||||||||||||| ||||| | ||||| || ||||| ||||    
T  5235822 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcctatggtaggaaaaattagtttttcccat 5235921  T
Q  102 actaaacctcacct 115  Q
     |||||| ||||||    
T  5235922 gctaaacttcacct 5235935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 5259262 - 5259379
Alignment:
Q  1 agaaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtg-gaaaaaagtaatttttcc 99  Q
    ||||||||||||||||| | |||||||||| |||||||||||| |||||| |||||||| |||||||||||||||||| ||  ||||||||| ||||  |    
T  5259262 agaaaatctagtgatgaaggagtatgataaagatgtgttcttgatttgatctaatggtcgaaaactaactttcccatgatgaaaaaaaagtagttttctc 5259361  T
Q  100 atactaaacctcacctga 117  Q
    || |||||||||||||||    
T  5259362 atgctaaacctcacctga 5259379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 52532237 - 52532125
Alignment:
Q  1 agaaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttcc 99  Q
    ||||||||||||||||||| ||||| |||| |||| |||||||||||||| |  ||||||||||| |||||||||||||| ||||||||||| |||| ||    
T  52532237 agaaaatctagtgatgagggagtataataaagatgcgttcttggtttgatctgctggtcaaaaacaaactttcccatggtgggaaaaaagtagttttccc 52532138  T
Q  100 atactaaacctca 112  Q
    || ||||||||||    
T  52532137 atgctaaacctca 52532125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 52532364 - 52532479
Alignment:
Q  1 agaaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttcc 99  Q
    |||||||||| |||||||| ||||| | |||||||||||||||||||||| || |||||||||||||||||||| | ||| |||||||||||  ||||||    
T  52532364 agaaaatctaatgatgagggagtataacaaggatgtgttcttggtttgatctactggtcaaaaactaactttccaacggtgggaaaaaagtagcttttcc 52532463  T
Q  100 atactaaacctcacct 115  Q
    ||  ||||||||||||    
T  52532464 atgttaaacctcacct 52532479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 115
Target Start/End: Original strand, 30213851 - 30213964
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggt-ggaaaaaagtaatttttccat 101  Q
    ||||||||||||||||| ||||||||||  || | ||||||||||||| |||||||||||||||||||||  |||||| | ||||||||| |||| ||||    
T  30213851 aaaatctagtgatgagggagtatgataaaaatatattcttggtttgatctaatggtcaaaaactaactttttcatggtagaaaaaaagtagttttcccat 30213950  T
Q  102 actaaacctcacct 115  Q
      ||||||||||||    
T  30213951 gataaacctcacct 30213964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 12590187 - 12590223
Alignment:
Q  52 taatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    |||||||||||||||||||||||||||||||||||||    
T  12590187 taatggtcaaaaactaactttcccatggtggaaaaaa 12590223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 20175361 - 20175421
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaa 63  Q
    ||||||||||||||||| || ||| |||||||||||| |||||||||| ||||||| ||||    
T  20175361 aaaatctagtgatgagggagcatggtaaggatgtgttattggtttgatctaatggttaaaa 20175421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 88
Target Start/End: Complemental strand, 46764319 - 46764280
Alignment:
Q  49 atttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  46764319 atttaatggtcaaaaactaactttcccatggtgggaaaaa 46764280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 11680340 - 11680304
Alignment:
Q  52 taatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||||||||||||||||| |||||    
T  11680340 taatggtcaaaaactaactttcccatggtgggaaaaa 11680304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 11688619 - 11688583
Alignment:
Q  52 taatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||||||||||||||||| |||||    
T  11688619 taatggtcaaaaactaactttcccatggtgggaaaaa 11688583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 25655623 - 25655659
Alignment:
Q  52 taatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||||||||||||||||| |||||    
T  25655623 taatggtcaaaaactaactttcccatggtgggaaaaa 25655659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 88
Target Start/End: Complemental strand, 31910621 - 31910582
Alignment:
Q  49 atttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  31910621 atttaatggttaaaaactaactttcccatggtgggaaaaa 31910582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 4245 - 4160
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||    
T  4245 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 4160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 4560 - 4645
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||| |||| || ||||||||||||||||||| |||||||||    
T  4560 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaattgttaaaaactaactttcccatgatggaaaaaa 4645  T

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Target: scaffold0022 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 61686 - 61601
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||    
T  61686 aaaatctagtgatgagggagtatgagaaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatgatgggaaaaa 61601  T

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Target: scaffold0022; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 62023 - 62089
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaac 69  Q
    ||||||||||||||||| |||||| |||||||||| |||||||||||| ||||| | ||||||||||    
T  62023 aaaatctagtgatgagggagtatggtaaggatgtgatcttggtttgatctaatgctaaaaaactaac 62089  T

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Target: scaffold0006 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 202219 - 202304
Alignment:
Q  3 aaaatctagtgatgaggaagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||    
T  202219 aaaatctagtgatgagggagtatggtaaggatgtgttcttggtttgatttaatggttaaaaactaacttttccatggtgggaaaaa 202304  T

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Target: scaffold0136 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 22203 - 22247
Alignment:
Q  44 gtttgatttaatggtcaaaaactaactttcccatggtggaaaaaa 88  Q
    ||||||| |||||||||||||| || |||||||||||||||||||    
T  22203 gtttgatctaatggtcaaaaacaaattttcccatggtggaaaaaa 22247  T

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