View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21149_low_29 (Length: 236)
Name: NF21149_low_29
Description: NF21149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21149_low_29 |
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| [»] scaffold0578 (1 HSPs) |
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Alignment Details
Target: scaffold0578 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0578
Description:
Target: scaffold0578; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 2004 - 1805
Alignment:
| Q |
19 |
tgaatatgagagattttgtaatgaagaattgaaacctggattgcagaatttgacgatggaggaatcggcaccagcttcagatttgtcactggaatcagca |
118 |
Q |
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| T |
2004 |
tgaatatgagagattttgtaatgaagaattgaaacctggattgcagaatttgacgatggaggaatcggcaccagcttcagatttgtcactggaatcagca |
1905 |
T |
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| Q |
119 |
acttcttcagccttgtcactgcctgaagggccttccttactccgcgtgctttctgaaccagttcacaactttacttcagatgttgaatcgccgatctata |
218 |
Q |
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| T |
1904 |
acttcttcagccttgtcactgcctgaagggccttccttactccgcgtgctttctgaaccagttcacaactttacttcagatgttgaatcgccgatctata |
1805 |
T |
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Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 4956012 - 4955813
Alignment:
| Q |
19 |
tgaatatgagagattttgtaatgaagaattgaaacctggattgcagaatttgacgatggaggaatcggcaccagcttcagatttgtcactggaatcagca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4956012 |
tgaatatgagagattttgtaatgaagaattgaaacctggattgcagaatttgacgatggaggaatcggcaccagcttcagatttgtcactggaatcagca |
4955913 |
T |
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| Q |
119 |
acttcttcagccttgtcactgcctgaagggccttccttactccgcgtgctttctgaaccagttcacaactttacttcagatgttgaatcgccgatctata |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4955912 |
acttcttcagccttgtcactgcctgaagggccttccttactccgcgtgctttctgaaccagttcacaactttacttcagatgttgaatcgccgatctata |
4955813 |
T |
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