View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21149_low_3 (Length: 706)

Name: NF21149_low_3
Description: NF21149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21149_low_3
NF21149_low_3
[»] chr2 (11 HSPs)
chr2 (381-697)||(10973453-10973777)
chr2 (381-620)||(2973408-2973648)
chr2 (381-602)||(14230934-14231156)
chr2 (381-623)||(17826658-17826905)
chr2 (501-579)||(511241-511319)
chr2 (464-605)||(11553321-11553463)
chr2 (17-70)||(10973998-10974051)
chr2 (464-607)||(11818445-11818589)
chr2 (470-607)||(16206539-16206677)
chr2 (518-606)||(23379917-23380005)
chr2 (568-624)||(20661292-20661348)
[»] chr8 (8 HSPs)
chr8 (398-621)||(10601022-10601246)
chr8 (381-620)||(20526159-20526401)
chr8 (535-620)||(23558718-23558803)
chr8 (470-607)||(14505721-14505859)
chr8 (470-607)||(37590039-37590177)
chr8 (544-607)||(19299023-19299086)
chr8 (470-607)||(15990412-15990550)
chr8 (477-624)||(34723838-34723986)
[»] chr1 (14 HSPs)
chr1 (403-621)||(16678732-16678952)
chr1 (381-621)||(47726169-47726415)
chr1 (381-621)||(47747475-47747721)
chr1 (431-602)||(34696110-34696282)
chr1 (468-607)||(41117187-41117327)
chr1 (470-620)||(2002526-2002677)
chr1 (194-283)||(47063063-47063148)
chr1 (502-602)||(30981259-30981359)
chr1 (159-224)||(47026785-47026850)
chr1 (470-625)||(21701457-21701613)
chr1 (470-607)||(30033582-30033720)
chr1 (464-607)||(24065207-24065351)
chr1 (177-229)||(47030738-47030790)
chr1 (194-238)||(47061535-47061579)
[»] chr6 (7 HSPs)
chr6 (381-625)||(30140922-30141167)
chr6 (464-606)||(16416595-16416738)
chr6 (464-615)||(23508844-23508996)
chr6 (544-607)||(34355746-34355809)
chr6 (557-615)||(16890298-16890356)
chr6 (565-602)||(17391997-17392034)
chr6 (523-607)||(187089-187173)
[»] chr4 (15 HSPs)
chr4 (381-625)||(54027686-54027931)
chr4 (381-624)||(12355135-12355379)
chr4 (392-621)||(27066334-27066564)
chr4 (392-621)||(27087435-27087665)
chr4 (392-571)||(27066578-27066758)
chr4 (392-571)||(27066772-27066952)
chr4 (521-606)||(4462624-4462709)
chr4 (470-616)||(28860789-28860936)
chr4 (470-607)||(55227612-55227750)
chr4 (463-607)||(13686001-13686146)
chr4 (544-607)||(54823744-54823807)
chr4 (470-607)||(30859363-30859501)
chr4 (540-579)||(49745960-49745999)
chr4 (541-607)||(20527781-20527847)
chr4 (544-606)||(30190950-30191012)
[»] chr5 (11 HSPs)
chr5 (392-625)||(29754938-29755171)
chr5 (381-621)||(26683384-26683629)
chr5 (392-606)||(5335212-5335427)
chr5 (425-595)||(22864512-22864683)
chr5 (464-607)||(36044911-36045055)
chr5 (460-594)||(40299892-40300027)
chr5 (470-607)||(22292379-22292517)
chr5 (532-624)||(23976592-23976684)
chr5 (468-607)||(27493251-27493391)
chr5 (557-616)||(13948782-13948841)
chr5 (557-624)||(18759803-18759870)
[»] scaffold1964 (1 HSPs)
scaffold1964 (381-559)||(1023-1202)
[»] scaffold0643 (1 HSPs)
scaffold0643 (416-622)||(994-1201)
[»] chr3 (12 HSPs)
chr3 (384-618)||(12370776-12371011)
chr3 (532-595)||(12749485-12749548)
chr3 (470-620)||(18765582-18765733)
chr3 (470-607)||(6006037-6006175)
chr3 (544-624)||(31935315-31935395)
chr3 (502-602)||(45680111-45680211)
chr3 (470-607)||(17790152-17790290)
chr3 (470-607)||(19098594-19098732)
chr3 (545-607)||(36144802-36144864)
chr3 (529-607)||(35906934-35907012)
chr3 (544-616)||(31973573-31973645)
chr3 (464-607)||(49499404-49499548)
[»] scaffold0650 (1 HSPs)
scaffold0650 (464-624)||(288-449)
[»] chr7 (6 HSPs)
chr7 (464-607)||(48770106-48770250)
chr7 (470-607)||(32480215-32480353)
chr7 (468-607)||(15633227-15633367)
chr7 (544-606)||(30502581-30502643)
chr7 (544-625)||(3896540-3896621)
chr7 (523-605)||(27810590-27810672)
[»] scaffold0019 (1 HSPs)
scaffold0019 (460-602)||(73345-73488)
[»] scaffold0303 (1 HSPs)
scaffold0303 (470-616)||(14197-14344)
[»] scaffold0040 (1 HSPs)
scaffold0040 (544-607)||(62490-62553)
[»] scaffold0789 (1 HSPs)
scaffold0789 (544-624)||(4201-4281)


Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 381 - 697
Target Start/End: Complemental strand, 10973777 - 10973453
Alignment:
Q  381 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggt 480  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  10973777 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacggcttcccggtctttgctctcgtccaagtttaccaactctcgggt 10973678  T
Q  481 ggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttc--atatacccaatt 577  Q
    |||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||  ||||| ||||||    
T  10973677 ggagtttgttcggcgacaagctaatgtggtggctcacactctcgtaggggaagccacatttctcgtttgtcccacaatttattttcatatatatccaatt 10973578  T
Q  578 gtattgaaactttgattactaatgaaatgcattaagcacttttccctc-----nnnnnnnnnnntagaggctcgtgaatgtatgtaacgctaaaaaatct 672  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||                ||||||||||||||||||||||||||||||||||||    
T  10973577 gtattgaaactttgattactaatgaaatgcattaaacacttttccctcaaaaaaaaaaaaaaaatagaggctcgtgaatgtatgtaacgctaaaaaatct 10973478  T
Q  673 cagactctacatgcattgatgatgt 697  Q
    |||||||||||||||||||||||||    
T  10973477 cagactctacatgcattgatgatgt 10973453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 381 - 620
Target Start/End: Complemental strand, 2973648 - 2973408
Alignment:
Q  381 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggt 480  Q
    |||||||||| || ||||||| |||||||||||| |||||||| |||||||||||| |||||  |||||||||||||| |||||||||||||||||||||    
T  2973648 aagatgctctttactcgggtcgggaagacataactgaatttggcaacatcatcacggcttcctagtctttgctctcgtccaagtttaccaactctcgggt 2973549  T
Q  481 ggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgt 579  Q
    |||||||||||||| | |||||||||| ||||| |||||||||||| |||||||| ||||||||||||||||||| || ||||||| |||||||||||||    
T  2973548 ggagtttgttcggccacaagctaatgttgtggcccacactctcgcaagggaagccgcatttctcgctagtcccactatgtattttcgtatacccaattgt 2973449  T
Q  580 attgaaactttgattactaatgaaatgcattaagcactttt 620  Q
    ||||||||||||||||||||||||||||  |||||||||||    
T  2973448 attgaaactttgattactaatgaaatgctataagcactttt 2973408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 381 - 602
Target Start/End: Original strand, 14230934 - 14231156
Alignment:
Q  381 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggt 480  Q
    |||||| ||| |||||||||| |||||||||||| |||||||| |||||||||||  | |||||||||||||| | || |||||||||||||||| | ||    
T  14230934 aagatggtctttattcgggtcgggaagacataaccgaatttggaaacatcatcacagcctcccggtctttgcttttgtccaagtttaccaactctagagt 14231033  T
Q  481 ggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgt 579  Q
    |||||||||| ||| | ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||   || |||||||||||||||||||||    
T  14231034 ggagtttgttaggcgacaagctaatgtggtggctcacactcttgcaagggaagccacatttctcgctagtcccgttatctattttcatatacccaattgt 14231133  T
Q  580 attgaaactttgattactaatga 602  Q
    |||||||||||||||| ||||||    
T  14231134 attgaaactttgattattaatga 14231156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 381 - 623
Target Start/End: Original strand, 17826658 - 17826905
Alignment:
Q  381 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcac-ga-cttcccggtctttg--ctctcgttcaagtttaccaactctc 476  Q
    |||||||||| |||||| ||| |||||| ||||| |||||||||||||||||||| || ||||| |||||||   |||| || |||||||| |||||||     
T  17826658 aagatgctctttattcgtgtcgggaagatataaccgaatttggtaacatcatcacagagcttcctggtctttttactcttgtccaagtttagcaactcta 17826757  T
Q  477 gggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaa 575  Q
     ||||||||||| | ||| | ||| ||||||||||||||||||| | | ||| ||||||| ||| |||||||||||| | ||||||| |||||||| |||    
T  17826758 cggtggagtttgctaggcgacaagataatgtggtggctcacactgttgtaggagaagccatattcctcgctagtcccgctatttattatcatatactcaa 17826857  T
Q  576 ttgtattgaaactttgattactaatgaaatgcattaagcacttttccc 623  Q
    ||||||||||||||||||||  |||||||| |  ||||||| ||||||    
T  17826858 ttgtattgaaactttgattatcaatgaaatactataagcacctttccc 17826905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 501 - 579
Target Start/End: Complemental strand, 511319 - 511241
Alignment:
Q  501 taatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgt 579  Q
    ||||||||||||||||||||| ||| | |||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  511319 taatgtggtggctcacactcttgcaagagaagccacatttctcgctagtcccgctatttattttcatatacccaattgt 511241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 464 - 605
Target Start/End: Original strand, 11553321 - 11553463
Alignment:
Q  464 tttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttatt 562  Q
    |||||||||||| |||||||||||  ||||| | ||||||||| ||| | |||   ||||||||| ||||||||||| || ||||||||||| |||||||    
T  11553321 tttaccaactctagggtggagtttactcggcgacaagctaatgaggttgatcatgttctcgcaggagaagccacattactagctagtcccaccatttatt 11553420  T
Q  563 ttcatatacccaattgtattgaaactttgattactaatgaaat 605  Q
    ||||||||||| | | |||||||||| | |||| |||||||||    
T  11553421 ttcatatacccgaatatattgaaactcttattattaatgaaat 11553463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 10974051 - 10973998
Alignment:
Q  17 aaaagaaatggagatgaggctgtgaaaagtgggaatcaaaaatatgtccggcac 70  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  10974051 aaaagaaatggagatgaggctgtggaaagtgggaaccaaaaatatgtccggcac 10973998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 464 - 607
Target Start/End: Complemental strand, 11818589 - 11818445
Alignment:
Q  464 tttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttatt 562  Q
    |||||||||||| |||||||||||||| ||| | |||| || | ||| |||||   ||| ||||| |||||||| || || |||||||||   |||||||    
T  11818589 tttaccaactctagggtggagtttgttaggcgacaagcaaacgaggttgctcatgttcttgcaggagaagccacgttactagctagtcccgttatttatt 11818490  T
Q  563 ttcatatacccaattgtattgaaactttgattactaatgaaatgc 607  Q
    |||| |||||||||| ||||||| || | |||| |||||||||||    
T  11818489 ttcagatacccaattatattgaacctcttattattaatgaaatgc 11818445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 470 - 607
Target Start/End: Original strand, 16206539 - 16206677
Alignment:
Q  470 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 568  Q
    |||||| |||||||||||||| ||| | |||| || ||||| |||||  |||| ||| |||| ||||| | | | ||||||||| |  |||||||| |||    
T  16206539 aactctagggtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagggaggccacgtctttagctagtcccgccgtttattttaata 16206638  T
Q  569 tacccaattgtattgaaactttgattactaatgaaatgc 607  Q
    |||||||||||||||||||| | ||||  ||||||||||    
T  16206639 tacccaattgtattgaaactcttattataaatgaaatgc 16206677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 518 - 606
Target Start/End: Original strand, 23379917 - 23380005
Alignment:
Q  518 ctctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatgaaatg 606  Q
    |||||||| | |||| |||||| || |||||| || |  |||||||| | ||||||||||||||||||||| | |||| ||||||||||    
T  23379917 ctctcgcaagagaagtcacattactagctagttccgctgtttattttaaaatacccaattgtattgaaactattattattaatgaaatg 23380005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 568 - 624
Target Start/End: Original strand, 20661292 - 20661348
Alignment:
Q  568 atacccaattgtattgaaactttgattactaatgaaatgcattaagcacttttccct 624  Q
    |||||||||||||||||| |||||||||  ||||||||||  ||||||  |||||||    
T  20661292 atacccaattgtattgaatctttgattatcaatgaaatgctataagcaagtttccct 20661348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 169; Significance: 3e-90; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 398 - 621
Target Start/End: Original strand, 10601022 - 10601246
Alignment:
Q  398 ggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-at 496  Q
    |||| |||||||||||| |||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |     
T  10601022 ggtcgggaagacataactgaatttggcaacatcatcacgactttccggtctttgctctcgtccaagtttaccaactctcaggtggagtttgttcggcgac 10601121  T
Q  497 aagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgattac 596  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||    
T  10601122 aagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccactatttatcttcatatacccaattatattgaaactttgattac 10601221  T
Q  597 taatgaaatgcattaagcacttttc 621  Q
    |||||||||||  ||||||||||||    
T  10601222 taatgaaatgctataagcacttttc 10601246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 381 - 620
Target Start/End: Complemental strand, 20526401 - 20526159
Alignment:
Q  381 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggt 480  Q
    |||||||| | || ||||||| |||||||||||| ||| | |||||||| ||||   ||||||||| ||||||||||||||| |||||||||||||||||    
T  20526401 aagatgctatttactcgggtcgggaagacataactgaagtcggtaacattatcattgcttcccggtttttgctctcgttcaaatttaccaactctcgggt 20526302  T
Q  481 ggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgt 579  Q
    |||||||||||||| | ||| ||||||||||||||| |||||||||||||| |||||||||||| |||||| ||| ||||||||||||||||||||||||    
T  20526301 ggagtttgttcggcgacaagttaatgtggtggctcatactctcgcaggggaggccacatttctcactagtcgcactatttattttcatatacccaattgt 20526202  T
Q  580 attgaaactttgat--tactaatgaaatgcattaagcactttt 620  Q
    ||||||||||| ||  ||||||||||||||  ||| |||||||    
T  20526201 attgaaactttaattatactaatgaaatgctataaacactttt 20526159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 535 - 620
Target Start/End: Original strand, 23558718 - 23558803
Alignment:
Q  535 acatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatgaaatgcattaagcactttt 620  Q
    |||||||| ||||||||||| ||||||||||| |||||| | |||||||| |||||||||  ||||||||||   |||||||||||    
T  23558718 acatttctagctagtcccactatttattttcacataccccaatgtattgagactttgattgttaatgaaatgttataagcactttt 23558803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 470 - 607
Target Start/End: Original strand, 14505721 - 14505859
Alignment:
Q  470 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 568  Q
    |||||| |||||||||||||| ||| | |||| || ||||| |||||  |||| ||| |||| ||||| | | | ||||||||| |  |||||||| |||    
T  14505721 aactctagggtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagggaggccacgtctttagctagtcccgccgtttattttaata 14505820  T
Q  569 tacccaattgtattgaaactttgattactaatgaaatgc 607  Q
    |||||||||||||||||||| | ||||  ||||||||||    
T  14505821 tacccaattgtattgaaactcttattataaatgaaatgc 14505859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 470 - 607
Target Start/End: Complemental strand, 37590177 - 37590039
Alignment:
Q  470 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 568  Q
    |||||| |||||||||||||| ||| | |||| || ||||| |||||  |||| ||| |||| ||||| | | | |||||| || |  |||||||| |||    
T  37590177 aactctagggtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagggaggccacgtctttagctagttccgccgtttattttaata 37590078  T
Q  569 tacccaattgtattgaaactttgattactaatgaaatgc 607  Q
    |||||||||||||||||||| | |||| |||||||||||    
T  37590077 tacccaattgtattgaaactcttattattaatgaaatgc 37590039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 544 - 607
Target Start/End: Complemental strand, 19299086 - 19299023
Alignment:
Q  544 gctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatgaaatgc 607  Q
    ||||||||| |  |||||||| ||||||||||||||||||||| ||| |||| |||||||||||    
T  19299086 gctagtcccgccgtttattttgatatacccaattgtattgaaatttttattattaatgaaatgc 19299023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 470 - 607
Target Start/End: Complemental strand, 15990550 - 15990412
Alignment:
Q  470 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 568  Q
    |||||| |||||||||||||| ||| | ||||  | ||||| |||||  |||| ||| |||| ||||| | | | ||||||||| |  |||||||| |||    
T  15990550 aactctagggtggagtttgttaggcgacaagcctacgtggttgctcatgctcttgcaagggaggccacgtctttagctagtcccgccgtttattttaata 15990451  T
Q  569 tacccaattgtattgaaactttgattactaatgaaatgc 607  Q
    |||||||||||||||||||| | ||||  ||||||||||    
T  15990450 tacccaattgtattgaaactcttattataaatgaaatgc 15990412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 477 - 624
Target Start/End: Complemental strand, 34723986 - 34723838
Alignment:
Q  477 gggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaa 575  Q
    |||||||||||||| ||| | |||| || ||||| ||||| ||||| ||| | |||||||| | | | ||||||| | |  |||||| | ||||||||||    
T  34723986 gggtggagtttgttaggcgacaagccaacgtggttgctcatactcttgcaagagaagccacgtctttagctagtctcgccgtttattatgatatacccaa 34723887  T
Q  576 ttgtattgaaactttgattactaatgaaatgcattaagcacttttccct 624  Q
    |||||||||| || | || | |||||||||||  ||||||  |||||||    
T  34723886 ttgtattgaatctattatgattaatgaaatgctctaagcatctttccct 34723838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 149; Significance: 2e-78; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 403 - 621
Target Start/End: Complemental strand, 16678952 - 16678732
Alignment:
Q  403 ggaagacataa-cagaatttggtaacatcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagc 500  Q
    ||||||||||| | |||||||| |||||||||||| |||||||||||||||||||||  ||||||||||||||||| |||||||||||||||| | ||      
T  16678952 ggaagacataaactgaatttggcaacatcatcacggcttcccggtctttgctctcgtcaaagtttaccaactctcgcgtggagtttgttcggcgacaaat 16678853  T
Q  501 taatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaat 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  16678852 taatgtggtggctcacactctcgcaggggaagccacatttctcgcttgtcccactatttattttcatatacccaattggattgaaactttgattactaat 16678753  T
Q  601 gaaatgcattaagcacttttc 621  Q
    |||||||  ||||||||||||    
T  16678752 gaaatgctataagcacttttc 16678732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 381 - 621
Target Start/End: Original strand, 47726169 - 47726415
Alignment:
Q  381 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggt 480  Q
    |||| ||||| || ||| ||| |||||||||||| |||||||| |||||||||||   |||||||||||||||||||| |||||||||||||||||| ||    
T  47726169 aagacgctctttactcgagtcgggaagacataactgaatttggcaacatcatcacatattcccggtctttgctctcgtccaagtttaccaactctcgagt 47726268  T
Q  481 ggagtttgttcggc-ataagcta-----atgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatataccca 574  Q
    |||||||||| ||| | ||||||     |||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  47726269 ggagtttgtttggcgacaagctattataatgtggtgtctcacactctcgcagggaaagccacatttctcgctagtcccactatttattttcatataccca 47726368  T
Q  575 attgtattgaaactttgattactaatgaaatgcattaagcacttttc 621  Q
    |||||||||||||||||||||||||||||||||  ||| ||||||||    
T  47726369 attgtattgaaactttgattactaatgaaatgctataaacacttttc 47726415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 381 - 621
Target Start/End: Original strand, 47747475 - 47747721
Alignment:
Q  381 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggt 480  Q
    |||| ||||| || ||| ||| |||||||||||| |||||||| |||||||||||   |||||||||||||||||||| |||||||||||||||||| ||    
T  47747475 aagacgctctttactcgagtcgggaagacataactgaatttggcaacatcatcacatattcccggtctttgctctcgtccaagtttaccaactctcgagt 47747574  T
Q  481 ggagtttgttcggc-ataagcta-----atgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatataccca 574  Q
    |||||||||| ||| | ||||||     |||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  47747575 ggagtttgtttggcgacaagctattataatgtggtgtctcacactctcgcagggaaagccacatttctcgctagtcccactatttattttcatataccca 47747674  T
Q  575 attgtattgaaactttgattactaatgaaatgcattaagcacttttc 621  Q
    |||||||||||||||||||||||||||||||||  ||| ||||||||    
T  47747675 attgtattgaaactttgattactaatgaaatgctataaacacttttc 47747721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 431 - 602
Target Start/End: Complemental strand, 34696282 - 34696110
Alignment:
Q  431 atcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcagggg 529  Q
    |||||| ||||||||  | | ||||| | |||||| | |||||||||||||||||||| | ||  | |||  |||||||| ||||| ||||||| ||| |    
T  34696282 atcacggcttcccggattcttctctcttccaagttcaacaactctcgggtggagtttgctaggagacaagaaaatgtggttgctcatactctcgaaggag 34696183  T
Q  530 aagccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatga 602  Q
    |  |||| ||||| ||||||| |    ||||||||||||||||| ||||||||||||||||||||| ||||||    
T  34696182 agaccacgtttctagctagtctcgttgtttattttcatataccccattgtattgaaactttgattattaatga 34696110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 468 - 607
Target Start/End: Original strand, 41117187 - 41117327
Alignment:
Q  468 ccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttca 566  Q
    ||||||||||||||||||||||| ||| | |||| |||| ||| |||||  |||| ||| | |||||||| || || |||||||||||  |||||||| |    
T  41117187 ccaactctcgggtggagtttgttaggcgacaagccaatgaggttgctcatgctcttgcaagagaagccacgttactagctagtcccaccgtttattttga 41117286  T
Q  567 tatacccaattgtattgaaactttgattactaatgaaatgc 607  Q
     ||||||||||||||| ||||| | ||||  ||||||||||    
T  41117287 gatacccaattgtattcaaactattattatcaatgaaatgc 41117327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 470 - 620
Target Start/End: Complemental strand, 2002677 - 2002526
Alignment:
Q  470 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 568  Q
    ||||||||||||||||||||  ||  | |||| |||||||| ||||| ||||||||| | ||  |||||||||||||||||||    | |||||||  ||    
T  2002677 aactctcgggtggagtttgtcaggagacaagcaaatgtggttgctcatactctcgcatgagagaccacatttctcgctagtccagttacttattttatta 2002578  T
Q  569 tacccaattgtattgaaactttgattactaatgaaatgcattaagcactttt 620  Q
    |||| | |||||||||||||||||||| |||||| ||||  ||| |||||||    
T  2002577 tacctagttgtattgaaactttgattattaatgagatgctataaacactttt 2002526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 194 - 283
Target Start/End: Original strand, 47063063 - 47063148
Alignment:
Q  194 atgtatgtaatgtttctttgcagcgatgtggaactagaaggcgttgtttctactatatatctactatccactcccaccccaaacttggca 283  Q
    ||||||| ||||||||||||||||||||||| ||||  ||||||| |||||||    |||||||| ||||||| |||||| |||||||||    
T  47063063 atgtatgaaatgtttctttgcagcgatgtgggactaccaggcgttatttctac----tatctactctccactctcacccccaacttggca 47063148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 502 - 602
Target Start/End: Original strand, 30981259 - 30981359
Alignment:
Q  502 aatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatg 601  Q
    |||||||| ||||| |||||||||||  | | |||||||||||||||| ||   | |||||||  |||||||| ||||||||||||||| |||| |||||    
T  30981259 aatgtggttgctcatactctcgcaggaaaggtcacatttctcgctagttccgttacttattttgttatacccagttgtattgaaactttaattattaatg 30981358  T
Q  602 a 602  Q
    |    
T  30981359 a 30981359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 47026785 - 47026850
Alignment:
Q  159 tgactttgtcaaaggcacttatataagatatcttcatgtatgtaatgtttctttgcagcgatgtgg 224  Q
    ||||| ||||||||||| |||||||| | || | |||||||| ||||||| |||||||||||||||    
T  47026785 tgactctgtcaaaggcaattatataaaacatgtccatgtatgcaatgtttgtttgcagcgatgtgg 47026850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 625
Target Start/End: Complemental strand, 21701613 - 21701457
Alignment:
Q  470 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 568  Q
    |||||| |||||||||||||| ||| |||||| || ||||| |||||  ||||  || | || ||||| | | | ||||||||| |  |||||| | |||    
T  21701613 aactctagggtggagtttgttaggcgataagccaacgtggttgctcatgctctttcacgagaggccacgtctttagctagtcccgccgtttattatgata 21701514  T
Q  569 tacccaattgtattgaaactttgattactaatgaaatgcattaagcacttttccctc 625  Q
    ||| |||||||||||||||| | || | |||||||||||  ||||||| ||||||||    
T  21701513 tactcaattgtattgaaactcttatgattaatgaaatgctataagcacgtttccctc 21701457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 470 - 607
Target Start/End: Original strand, 30033582 - 30033720
Alignment:
Q  470 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 568  Q
    |||||| |||||||||||||| ||| | |||| |  ||||| |||||  |||| ||| |||| ||||| | | | ||||||||| |  |||||||| |||    
T  30033582 aactctagggtggagtttgttaggcgacaagccagcgtggttgctcatgctcttgcaagggaggccacgtctttagctagtcccgccgtttattttaata 30033681  T
Q  569 tacccaattgtattgaaactttgattactaatgaaatgc 607  Q
    ||||||||| |||||||||| | ||||  ||||||||||    
T  30033682 tacccaattatattgaaactcttattataaatgaaatgc 30033720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 464 - 607
Target Start/End: Original strand, 24065207 - 24065351
Alignment:
Q  464 tttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttatt 562  Q
    |||||||||| | |||||||||||||| ||| | |||| || | ||| |||||   ||| ||||| |||||||| || || |||||||||    ||||||    
T  24065207 tttaccaactttagggtggagtttgttaggcgacaagcaaacgaggttgctcatgttcttgcaggagaagccacgttactagctagtcccgttgtttatt 24065306  T
Q  563 ttcatatacccaattgtattgaaactttgattactaatgaaatgc 607  Q
    |||| |||||| |||||||||||  | | |||| |||||||||||    
T  24065307 ttcacatacccgattgtattgaacttcttattattaatgaaatgc 24065351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 47030738 - 47030790
Alignment:
Q  177 ttatataagatatcttcatgtatgtaatgtttctttgcagcgatgtggaacta 229  Q
    |||||||||||||||||| ||||  |||||| ||||| |||||||||| ||||    
T  47030738 ttatataagatatcttcaagtatagaatgttactttggagcgatgtgggacta 47030790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 47061535 - 47061579
Alignment:
Q  194 atgtatgtaatgtttctttgcagcgatgtggaactagaaggcgtt 238  Q
    ||||||| |||||||||||| |||||||||| |||| ||||||||    
T  47061535 atgtatgcaatgtttctttgaagcgatgtgggactaaaaggcgtt 47061579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 142; Significance: 4e-74; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 381 - 625
Target Start/End: Complemental strand, 30141167 - 30140922
Alignment:
Q  381 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggt 480  Q
    |||||| ||| |||||||||| |||||||||||| |||| ||| |||||||||||  |||||||||||||||| | || |||||||||||||||| ||||    
T  30141167 aagatggtctttattcgggtcgggaagacataacggaatgtggaaacatcatcacagcttcccggtctttgcttttgtccaagtttaccaactctagggt 30141068  T
Q  481 ggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgt 579  Q
    |||||||||| ||| | ||||||||||||||| ||||||||| |||  ||||||||||||||||||||||||| | || |||||||||||||||||||||    
T  30141067 ggagtttgttaggcgacaagctaatgtggtggatcacactcttgcaaaggaagccacatttctcgctagtcccgctatctattttcatatacccaattgt 30140968  T
Q  580 attgaaactttgattactaatgaaatgcattaagcacttttccctc 625  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||    
T  30140967 attgaaactttgattattaatgaaatgctataagcacttttccctc 30140922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 464 - 606
Target Start/End: Original strand, 16416595 - 16416738
Alignment:
Q  464 tttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttatt 562  Q
    |||||||||||| ||||| |||||||| ||| | |||  |||| ||| ||||  | ||| ||||| || | |||||| || ||||||| ||  |||||||    
T  16416595 tttaccaactctagggtgtagtttgttaggcgacaagtaaatgaggttgctcgtattcttgcaggagatgtcacattactagctagtctcattatttatt 16416694  T
Q  563 ttcatatacccaattgtattgaaactttgattactaatgaaatg 606  Q
    ||||||||||||||||||||||| || | |||| ||||||||||    
T  16416695 ttcatatacccaattgtattgaacctcttattattaatgaaatg 16416738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 464 - 615
Target Start/End: Complemental strand, 23508996 - 23508844
Alignment:
Q  464 tttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttatt 562  Q
    |||||||| ||| |||||||||||||| ||| | |||| |||| ||| |||||   ||| ||||| ||||||||||| |  |||||||||    |||| |    
T  23508996 tttaccaattctagggtggagtttgttaggcgacaagcaaatggggttgctcatgttcttgcaggagaagccacattacgagctagtcccgttgtttaat 23508897  T
Q  563 ttcatatacccaattgtattgaaactttgattactaatgaaatgcattaagca 615  Q
    |||| |||||  ||||||||||| || | |||| |||||||||||| ||||||    
T  23508896 ttcacatacctgattgtattgaacctcttattattaatgaaatgcaataagca 23508844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 544 - 607
Target Start/End: Complemental strand, 34355809 - 34355746
Alignment:
Q  544 gctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatgaaatgc 607  Q
    ||||||||| |  |||||||| ||||||||||||||||||||||| | ||||  ||||||||||    
T  34355809 gctagtcccgctgtttattttgatatacccaattgtattgaaactcttattatcaatgaaatgc 34355746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 557 - 615
Target Start/End: Original strand, 16890298 - 16890356
Alignment:
Q  557 tttattttcatatacccaattgtattgaaactttgattactaatgaaatgcattaagca 615  Q
    |||||||| |||||||||||||| |||||||| |  ||| |||||||||||| ||||||    
T  16890298 tttattttgatatacccaattgttttgaaactcttgttattaatgaaatgcaataagca 16890356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 565 - 602
Target Start/End: Complemental strand, 17392034 - 17391997
Alignment:
Q  565 catatacccaattgtattgaaactttgattactaatga 602  Q
    ||||||||| ||||||||||||||||||||| ||||||    
T  17392034 catataccctattgtattgaaactttgattattaatga 17391997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 523 - 607
Target Start/End: Original strand, 187089 - 187173
Alignment:
Q  523 gcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatgaaatgc 607  Q
    ||||| |||||||||||||| |||||||     ||||||||| | ||| |||||||||||||| || | |||| |||||||||||    
T  187089 gcaggagaagccacatttctagctagtcttgttatttattttaacatatccaattgtattgaatctcttattattaatgaaatgc 187173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 134; Significance: 2e-69; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 381 - 625
Target Start/End: Complemental strand, 54027931 - 54027686
Alignment:
Q  381 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggt 480  Q
    |||| ||||| | |||| ||| |||||| ||||| |||||||||||||||||||| |||||||||||||| |||| || |||||||||||||||| ||||    
T  54027931 aagacgctctttgttcgagtcgggaagatataaccgaatttggtaacatcatcacaacttcccggtctttactcttgtccaagtttaccaactctagggt 54027832  T
Q  481 ggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgt 579  Q
    ||||||| || ||| | ||||||||||||||||||||||||| | ||||||||||||||||||||||| |||| | |||||||||||||||||||||| |    
T  54027831 ggagttttttaggcgacaagctaatgtggtggctcacactcttgtaggggaagccacatttctcgctactcccgctatttattttcatatacccaattat 54027732  T
Q  580 attgaaactttgattactaatgaaatgcattaagcacttttccctc 625  Q
    |||||||||||||||| ||||||||||   ||||||| ||||||||    
T  54027731 attgaaactttgattattaatgaaatgatataagcacatttccctc 54027686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 381 - 624
Target Start/End: Original strand, 12355135 - 12355379
Alignment:
Q  381 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggt 480  Q
    |||||| ||| |||||||||| |||||||||||| |||||||| || ||||||||  |||||||||| ||||| | || |||||||||||||||| ||||    
T  12355135 aagatggtctttattcgggtcgggaagacataacggaatttggaaatatcatcacagcttcccggtccttgcttttgtccaagtttaccaactctagggt 12355234  T
Q  481 ggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgt 579  Q
    |||||||||| ||| | ||| |||||||||||||||||||||  ||  |||| |||||||||||||||||||||| || |||||||||||||||||||||    
T  12355235 ggagtttgttaggcgacaaggtaatgtggtggctcacactcttccaaaggaaaccacatttctcgctagtcccactatctattttcatatacccaattgt 12355334  T
Q  580 attgaaactttgattactaatgaaatgcattaagcacttttccct 624  Q
    |||||||||||||||| ||||||||||| |||||||| |||||||    
T  12355335 attgaaactttgattattaatgaaatgctttaagcacctttccct 12355379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 392 - 621
Target Start/End: Complemental strand, 27066564 - 27066334
Alignment:
Q  392 tattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttc 491  Q
    |||||||||| |||||||||||  |||||||| ||||||||||| ||||||||||||||||| | || |||||||||||||||| ||||||||||||||     
T  27066564 tattcgggtcgggaagacataatggaatttggaaacatcatcacaacttcccggtctttgcttttgtccaagtttaccaactctagggtggagtttgttg 27066465  T
Q  492 ggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaacttt 590  Q
    ||| | ||||||||||||||| ||||||||| |||  ||||||||||||||||||||||||| | || ||||||||||||| ||||||||||||||||||    
T  27066464 ggcgacaagctaatgtggtgggtcacactcttgcaaaggaagccacatttctcgctagtcccgctatctattttcatatactcaattgtattgaaacttt 27066365  T
Q  591 gattactaatgaaatgcattaagcacttttc 621  Q
    ||||| |||||||||||  ||||||| ||||    
T  27066364 gattattaatgaaatgctataagcacatttc 27066334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 392 - 621
Target Start/End: Complemental strand, 27087665 - 27087435
Alignment:
Q  392 tattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttc 491  Q
    |||||||||| |||||||||||  |||||||| ||||||||||| |||| |||||||||||| | || |||||||||||||||| ||||||||||||||     
T  27087665 tattcgggtcgggaagacataatggaatttggaaacatcatcacaactttccggtctttgcttttgtccaagtttaccaactctagggtggagtttgtta 27087566  T
Q  492 ggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaacttt 590  Q
    ||| | ||||||||||||||| ||||||||| |||  ||||||||||||||||||||||||| | || ||||||||||||| ||||||||||||||||||    
T  27087565 ggcgacaagctaatgtggtgggtcacactcttgcaaaggaagccacatttctcgctagtcccgctatctattttcatatactcaattgtattgaaacttt 27087466  T
Q  591 gattactaatgaaatgcattaagcacttttc 621  Q
    ||||| |||||||||||  ||||||| ||||    
T  27087465 gattattaatgaaatgctataagcacatttc 27087435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 392 - 571
Target Start/End: Complemental strand, 27066758 - 27066578
Alignment:
Q  392 tattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttc 491  Q
    |||||||||| |||||||||||  |||||||| ||||||||||| |||| |||||||||||| | || |||||||||||||||| ||||||||||||||     
T  27066758 tattcgggtcgggaagacataatggaatttggaaacatcatcacaactttccggtctttgcttttgtccaagtttaccaactctagggtggagtttgtta 27066659  T
Q  492 ggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatac 571  Q
    ||| | ||||||||||||||| ||||||||| |||  ||||||||||||||||||||||||| | || |||||||||||||    
T  27066658 ggcgacaagctaatgtggtgggtcacactcttgcaaaggaagccacatttctcgctagtcccgctatctattttcatatac 27066578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 392 - 571
Target Start/End: Complemental strand, 27066952 - 27066772
Alignment:
Q  392 tattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttc 491  Q
    |||||||||| |||||||||||  |||||||| ||||||||||| |||| |||||||||||| | || |||||||||||||||| ||||||||||||||     
T  27066952 tattcgggtcgggaagacataatggaatttggaaacatcatcacaactttccggtctttgcttttgtccaagtttaccaactctagggtggagtttgtta 27066853  T
Q  492 ggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatac 571  Q
    ||| | ||||||||||||||| ||||||||| |||  ||||||||||||||||||||||||| | || |||||||||||||    
T  27066852 ggcgacaagctaatgtggtgggtcacactcttgcaaaggaagccacatttctcgctagtcccgctatctattttcatatac 27066772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 521 - 606
Target Start/End: Original strand, 4462624 - 4462709
Alignment:
Q  521 tcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatgaaatg 606  Q
    ||||||| ||||||||||| ||  |||||||||||||||||||||||||| |  | |||||||||||||| |||| |||| |||||    
T  4462624 tcgcaggagaagccacattactaactagtcccacaatttattttcatatatctgaatgtattgaaacttttattattaataaaatg 4462709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 470 - 616
Target Start/End: Original strand, 28860789 - 28860936
Alignment:
Q  470 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 568  Q
    ||||||||||||||||||||| ||| | |||| |||||||| ||||||||||||||  | || ||||||||  | |||||| ||  | |||||| |  ||    
T  28860789 aactctcgggtggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgcta 28860888  T
Q  569 tacccaattgtattgaaactttgattactaatgaaatgcattaagcac 616  Q
    ||| ||||||||||||| |||||||||  ||||| ||||  |||||||    
T  28860889 tactcaattgtattgaatctttgattataaatgatatgctataagcac 28860936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 470 - 607
Target Start/End: Original strand, 55227612 - 55227750
Alignment:
Q  470 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 568  Q
    |||||| |||||||||||||| ||| | || | || ||||| |||||  |||| ||| |||| ||||||| | | ||||||||| |  |||||||| |||    
T  55227612 aactctagggtggagtttgttaggcgacaaaccaacgtggttgctcatgctcttgcaagggaggccacatctttagctagtcccgccgtttattttaata 55227711  T
Q  569 tacccaattgtattgaaactttgattactaatgaaatgc 607  Q
    |||||||||||||||||||| | ||||  ||||||||||    
T  55227712 tacccaattgtattgaaactcttattataaatgaaatgc 55227750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 463 - 607
Target Start/End: Original strand, 13686001 - 13686146
Alignment:
Q  463 gtttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttat 561  Q
    ||||||||||||| |||||||||||||| ||| | |||| || | ||| |||||   ||| ||| | |||| ||| || || ||||||||||   |||||    
T  13686001 gtttaccaactctagggtggagtttgttaggcgacaagcaaacggggttgctcatgttcttgcaagagaagtcacgttactagctagtcccattgtttat 13686100  T
Q  562 tttcatatacccaattgtattgaaactttgattactaatgaaatgc 607  Q
    |||||||||||| ||||||||||| || | |||| |||||||||||    
T  13686101 tttcatatacccgattgtattgaatctcttattattaatgaaatgc 13686146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 544 - 607
Target Start/End: Original strand, 54823744 - 54823807
Alignment:
Q  544 gctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatgaaatgc 607  Q
    ||||||||| |  |||||||| ||||||||||||||||||||| ||| |||| |||||||||||    
T  54823744 gctagtcccgccgtttattttgatatacccaattgtattgaaatttttattattaatgaaatgc 54823807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 470 - 607
Target Start/End: Original strand, 30859363 - 30859501
Alignment:
Q  470 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 568  Q
    |||||| |||||||||||||| ||| | |||| || ||||| |||||  |||| ||| |||| ||||| | | |  |||||||| |  |||||||| |||    
T  30859363 aactctagggtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagggaggccacgtctttaactagtcccgccgtttattttaata 30859462  T
Q  569 tacccaattgtattgaaactttgattactaatgaaatgc 607  Q
    |||||||||||||||||||| | ||||  ||||||||||    
T  30859463 tacccaattgtattgaaactcttattataaatgaaatgc 30859501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 540 - 579
Target Start/End: Complemental strand, 49745999 - 49745960
Alignment:
Q  540 tctcgctagtcccacaatttattttcatatacccaattgt 579  Q
    ||||||| ||||||| ||||||||||||||||||||||||    
T  49745999 tctcgcttgtcccactatttattttcatatacccaattgt 49745960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 541 - 607
Target Start/End: Complemental strand, 20527847 - 20527781
Alignment:
Q  541 ctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatgaaatgc 607  Q
    |||||||||||| | ||||||| | |||||||| |||||||||||||| | ||||  ||||||||||    
T  20527847 ctcgctagtcccgccatttattatgatatacccgattgtattgaaactcttattatcaatgaaatgc 20527781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 544 - 606
Target Start/End: Complemental strand, 30191012 - 30190950
Alignment:
Q  544 gctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatgaaatg 606  Q
    ||||||||| |  |||||||| ||||| ||||||||||||||||| | |||| ||||||||||    
T  30191012 gctagtcccgccgtttattttgatatatccaattgtattgaaactcttattattaatgaaatg 30190950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 123; Significance: 8e-63; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 392 - 625
Target Start/End: Complemental strand, 29755171 - 29754938
Alignment:
Q  392 tattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttc 491  Q
    |||||||||  |||||||||||| |||||||| ||||||||||   |||||||||| ||||| | || |||||||||||||||| ||||||||||||||     
T  29755171 tattcgggttgggaagacataacggaatttggaaacatcatcatagcttcccggtccttgcttttgtccaagtttaccaactctagggtggagtttgtta 29755072  T
Q  492 ggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaacttt 590  Q
    ||| | ||||||||||||||||||||||||| |||  | ||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||    
T  29755071 ggcgacaagctaatgtggtggctcacactcttgcaaag-aagccacatttctcgctagtcccgctatctattttcatatacccaattgtattgaaacttt 29754973  T
Q  591 gattactaatgaaatgcattaagcacttttccctc 625  Q
    ||||| |||||||||||  ||||||| ||||||||    
T  29754972 gattattaatgaaatgctataagcacctttccctc 29754938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 381 - 621
Target Start/End: Original strand, 26683384 - 26683629
Alignment:
Q  381 aagatgctctatattcgggtcaggaagacata----acagaatttggtaacatcatcacgacttcccggtctttgctctcgttcaagtttaccaactctc 476  Q
    |||||||||| || ||||||| ||||||||||    || ||| | |||||||| ||||   |||||| |||||||||||||| ||||||| |||||||||    
T  26683384 aagatgctctttactcgggtctggaagacatatataactgaagtcggtaacattatcattgcttccccgtctttgctctcgtccaagttttccaactctc 26683483  T
Q  477 gggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaa 575  Q
    ||||||||||||||| || | ||| ||||||||||||||| ||||| |||||||| ||||||||||| ||||||||| | |||||||||||||||| ||     
T  26683484 gggtggagtttgttccgcgacaagttaatgtggtggctcatactcttgcaggggaggccacatttcttgctagtcccgctatttattttcatatactcag 26683583  T
Q  576 ttgtattgaaactttgattactaatgaaatgcattaagcacttttc 621  Q
    |||||||||||||| ||||||||||||||| |  ||||||||||||    
T  26683584 ttgtattgaaacttcgattactaatgaaattctataagcacttttc 26683629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 392 - 606
Target Start/End: Complemental strand, 5335427 - 5335212
Alignment:
Q  392 tattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttc 491  Q
    |||||||||| |||||||||||| |||||||| |||||||||||  |||||| ||||||| | | || |||||||||||||||| ||||||||||||||     
T  5335427 tattcgggtcgggaagacataactgaatttggaaacatcatcacagcttcccagtctttgtttttgtccaagtttaccaactctagggtggagtttgtta 5335328  T
Q  492 ggcat-aagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaacttt 590  Q
    ||||  ||||||||||| ||||||||||||| |||  ||||||||||||||||||||||| | | || |||||||||| | |||||| ||||||||||||    
T  5335327 ggcaacaagctaatgtgttggctcacactcttgcaaaggaagccacatttctcgctagtctcgctatctattttcataaatccaattatattgaaacttt 5335228  T
Q  591 gattactaatgaaatg 606  Q
    ||||| ||||||||||    
T  5335227 gattattaatgaaatg 5335212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 425 - 595
Target Start/End: Complemental strand, 22864683 - 22864512
Alignment:
Q  425 aacatcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggcat-aagctaatgtggtggctcacactctcg 523  Q
    ||||| |||||  ||||| | |||||||| |||| |||||||||||||||||| ||| |||||||| ||||  || ||||| || ||||||| | |||||    
T  22864683 aacattatcactgcttcctgatctttgctttcgtccaagtttaccaactctcgagtgaagtttgttaggcaacaaactaatatgttggctcatattctcg 22864584  T
Q  524 caggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgatta 595  Q
      |  || |||| |||| ||||||||||| | |||| |||| ||||||| |||||||||||||| |||||||    
T  22864583 tcgaagaggccatatttatcgctagtcccgctatttgtttttatatacctaattgtattgaaacgttgatta 22864512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 464 - 607
Target Start/End: Original strand, 36044911 - 36045055
Alignment:
Q  464 tttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttatt 562  Q
    |||||||||||| | ||| |||||||| ||| | |||| |||| ||| ||||| | ||| | ||| ||||||||||| || ||||||||||| |||||||    
T  36044911 tttaccaactctagagtgaagtttgttaggcgacaagccaatgaggttgctcatattcttgtaggagaagccacattactagctagtcccaccatttatt 36045010  T
Q  563 ttcatatacccaattgtattgaaactttgattactaatgaaatgc 607  Q
    ||||||| ||| | ||||||||| || | |||| |||||||||||    
T  36045011 ttcatatgcccgaatgtattgaatctcttattattaatgaaatgc 36045055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 460 - 594
Target Start/End: Original strand, 40299892 - 40300027
Alignment:
Q  460 caagtttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatt 558  Q
    |||||| | |||||||||||||||||||||| ||| | |||| || ||||| ||||| ||||||| ||  || |||||||||||||||||| ||    ||    
T  40299892 caagttcaacaactctcgggtggagtttgttaggcgacaagcaaacgtggttgctcatactctcgtagaagaggccacatttctcgctagttccgttgtt 40299991  T
Q  559 tattttcatatacccaattgtattgaaactttgatt 594  Q
    ||||||||||||||   ||||||||| |||||||||    
T  40299992 tattttcatataccactttgtattgagactttgatt 40300027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 470 - 607
Target Start/End: Original strand, 22292379 - 22292517
Alignment:
Q  470 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 568  Q
    |||||| |||||||||||||| ||| | |||| || ||||| |||||  |||| ||| |||| ||||| | | | ||||||||| |  |||||||| |||    
T  22292379 aactctagggtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagggaggccacgtctttagctagtcccgccgtttattttaata 22292478  T
Q  569 tacccaattgtattgaaactttgattactaatgaaatgc 607  Q
    |||||||||||||||||||| | ||||  ||||||||||    
T  22292479 tacccaattgtattgaaactcttattataaatgaaatgc 22292517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 532 - 624
Target Start/End: Original strand, 23976592 - 23976684
Alignment:
Q  532 gccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatgaaatgcattaagcacttttccct 624  Q
    ||||||||||||| |||||||   | |||||||  |||||| |  ||||||||||||||||||| |||||| ||||  |||||||||||||||    
T  23976592 gccacatttctcgttagtcccgttacttattttattatacctagatgtattgaaactttgattattaatgatatgctataagcacttttccct 23976684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 468 - 607
Target Start/End: Original strand, 27493251 - 27493391
Alignment:
Q  468 ccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttca 566  Q
    ||||||||| |||||||||||||  || | |||| ||||| |  ||||| ||||||||||  || ||||| ||  | ||||||||| || |||||| |      
T  27493251 ccaactctcaggtggagtttgttaagcgacaagccaatgtagcagctcatactctcgcagaagaggccacgttattagctagtcccgcagtttattatgt 27493350  T
Q  567 tatacccaattgtattgaaactttgattactaatgaaatgc 607  Q
    ||||||||||||||||||| |||||||||  ||||||||||    
T  27493351 tatacccaattgtattgaatctttgattataaatgaaatgc 27493391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 557 - 616
Target Start/End: Complemental strand, 13948841 - 13948782
Alignment:
Q  557 tttattttcatatacccaattgtattgaaactttgattactaatgaaatgcattaagcac 616  Q
    ||||||||||||||||| ||||||||||||||||||||| || ||| ||||  |||||||    
T  13948841 tttattttcatataccctattgtattgaaactttgattattattgatatgctataagcac 13948782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 557 - 624
Target Start/End: Original strand, 18759803 - 18759870
Alignment:
Q  557 tttattttcatatacccaattgtattgaaactttgattactaatgaaatgcattaagcacttttccct 624  Q
    |||||||| |||||||||||| |||||||||||| |||| |||||||||||  ||||||  |||||||    
T  18759803 tttattttgatatacccaattatattgaaacttttattattaatgaaatgctataagcatgtttccct 18759870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1964 (Bit Score: 116; Significance: 1e-58; HSPs: 1)
Name: scaffold1964
Description:

Target: scaffold1964; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 381 - 559
Target Start/End: Original strand, 1023 - 1202
Alignment:
Q  381 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggt 480  Q
    |||| ||||| || ||||||| |||||||||||| |||||||| ||||| |||||| ||| || |||||||||||||| |||||||||||||||||||||    
T  1023 aagacgctctttactcgggtcgggaagacataactgaatttggcaacattatcacggctttccagtctttgctctcgtccaagtttaccaactctcgggt 1122  T
Q  481 ggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaattt 559  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  1123 ggagtttgttcggcgacaagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagttccactattt 1202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0643 (Bit Score: 104; Significance: 2e-51; HSPs: 1)
Name: scaffold0643
Description:

Target: scaffold0643; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 416 - 622
Target Start/End: Original strand, 994 - 1201
Alignment:
Q  416 gaatttggtaacatcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctc 514  Q
    |||||||| |||||||||||  | ||||||||| |||| | || |||||||||||||||| |||||||||||||| ||| | || |||||||||||||||    
T  994 gaatttggaaacatcatcacagcctcccggtctatgcttttgtccaagtttaccaactctagggtggagtttgttaggcgacaaactaatgtggtggctc 1093  T
Q  515 acactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatgaaatgcattaagc 614  Q
    ||| |||  || |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||  |||||||| |||||||||||  |||||    
T  1094 acaatcttacaagggaagccacatttctcgctagtcccgctatttattttcatatacccaattgtattgaatgtttgattattaatgaaatgctataagc 1193  T
Q  615 acttttcc 622  Q
    || |||||    
T  1194 acctttcc 1201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 2e-51; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 384 - 618
Target Start/End: Complemental strand, 12371011 - 12370776
Alignment:
Q  384 atgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtgga 483  Q
    ||||||| || ||||||| |||||||||||| ||| | |||||||| |||||   |||||| |||||| | | || ||||||| ||||||||| ||||||    
T  12371011 atgctctttactcgggtcgggaagacataactgaagtcggtaacattatcactgtttcccgatctttgtttttgtccaagtttgccaactctctggtgga 12370912  T
Q  484 gtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgtatt 582  Q
    |||| |||||| | |||||||||||||| |||| ||||| |||||||| ||||||||||| ||||||||  | ||||||||||||||| |||||||||||    
T  12370911 gtttattcggcgacaagctaatgtggtgactcatactcttgcaggggaggccacatttcttgctagtcctgctatttattttcatatatccaattgtatt 12370812  T
Q  583 gaaactttgattactaatgaaatgcattaagcactt 618  Q
    |||||||||||||||||| ||||||  |||||||||    
T  12370811 gaaactttgattactaataaaatgctataagcactt 12370776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 532 - 595
Target Start/End: Original strand, 12749485 - 12749548
Alignment:
Q  532 gccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgatta 595  Q
    |||||||||||||||||||||   |||||||||||| |||| ||||||||||||||||||||||    
T  12749485 gccacatttctcgctagtcccgttatttattttcatgtacctaattgtattgaaactttgatta 12749548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 470 - 620
Target Start/End: Complemental strand, 18765733 - 18765582
Alignment:
Q  470 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 568  Q
    ||||||||||||||||||||| ||| | |||| ||| |||| ||||| ||||||||  | || ||||||||  | |||||| ||  |||||||| |  ||    
T  18765733 aactctcgggtggagtttgttaggcgacaagccaatttggtagctcatactctcgctagagaggccacattaatagctagtgccgtaatttattatgtta 18765634  T
Q  569 tacccaattgtattgaaactttgattactaatgaaatgcattaagcactttt 620  Q
    ||||||||||||||||| |||  ||||  ||||||||||  |||||||||||    
T  18765633 tacccaattgtattgaatcttctattataaatgaaatgctataagcactttt 18765582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 470 - 607
Target Start/End: Complemental strand, 6006175 - 6006037
Alignment:
Q  470 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 568  Q
    |||||| |||||||||||||| ||| | |||| || |||||  ||||  |||| ||| |||||||||| | | | ||||||||| |  |||||||| |||    
T  6006175 aactctagggtggagtttgttaggcgacaagccaacgtggtttctcatgctcttgcaagggaagccacgtctttagctagtcccgccgtttattttaata 6006076  T
Q  569 tacccaattgtattgaaactttgattactaatgaaatgc 607  Q
    |||||||||||||||||||| | ||||  ||||||||||    
T  6006075 tacccaattgtattgaaactcttattataaatgaaatgc 6006037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 544 - 624
Target Start/End: Original strand, 31935315 - 31935395
Alignment:
Q  544 gctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatgaaatgcattaagcacttttccct 624  Q
    ||||||||| |  |||||| | |||||||||||||||||||| ||||||| | |||||||||||  ||||||| |||||||    
T  31935315 gctagtcccgccgtttattatgatatacccaattgtattgaatctttgatgattaatgaaatgctctaagcacgtttccct 31935395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 502 - 602
Target Start/End: Complemental strand, 45680211 - 45680111
Alignment:
Q  502 aatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatg 601  Q
    |||||| | ||||| ||||| ||| | || ||||||||| | |||||||||    ||||||||| |||||||||||||||||| |||||||||| |||||    
T  45680211 aatgtgattgctcatactcttgcaagagaggccacattttttgctagtccctttgtttattttcgtatacccaattgtattgagactttgattattaatg 45680112  T
Q  602 a 602  Q
    |    
T  45680111 a 45680111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 470 - 607
Target Start/End: Original strand, 17790152 - 17790290
Alignment:
Q  470 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 568  Q
    |||||| |||||||||||||| ||| | |||| || ||||| |||||| |||| ||| |||| ||||| | | | |||||||   |  |||||||| |||    
T  17790152 aactctagggtggagtttgttaggcgacaagccaacgtggttgctcacgctcttgcaagggaggccacgtctttagctagtctagccgtttattttaata 17790251  T
Q  569 tacccaattgtattgaaactttgattactaatgaaatgc 607  Q
    |||||||||||||||||||| | ||||  ||||||||||    
T  17790252 tacccaattgtattgaaactcttattataaatgaaatgc 17790290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 470 - 607
Target Start/End: Original strand, 19098594 - 19098732
Alignment:
Q  470 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 568  Q
    |||||| |||||||||||||| ||| | |||| || ||||| |||||| |||| ||| |||| ||||| | | | |||||||   |  |||||||| |||    
T  19098594 aactctagggtggagtttgttaggcgacaagccaacgtggttgctcacgctcttgcaagggaggccacgtctttagctagtctagccgtttattttaata 19098693  T
Q  569 tacccaattgtattgaaactttgattactaatgaaatgc 607  Q
    |||||||||||||||||||| | ||||  ||||||||||    
T  19098694 tacccaattgtattgaaactcttattataaatgaaatgc 19098732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 545 - 607
Target Start/End: Original strand, 36144802 - 36144864
Alignment:
Q  545 ctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatgaaatgc 607  Q
    |||||||||| |||||||||||||||||| ||||||||||| || |  ||| |||||||||||    
T  36144802 ctagtcccactatttattttcatatacccgattgtattgaacctcttgttattaatgaaatgc 36144864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 529 - 607
Target Start/End: Complemental strand, 35907012 - 35906934
Alignment:
Q  529 gaagccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatgaaatgc 607  Q
    |||||||| || || ||||||||| |  |||||||| | ||||||||||||||||||||| | ||||  ||||||||||    
T  35907012 gaagccacgttactagctagtcccgctgtttattttgagatacccaattgtattgaaactatcattatcaatgaaatgc 35906934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 544 - 616
Target Start/End: Original strand, 31973573 - 31973645
Alignment:
Q  544 gctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatgaaatgcattaagcac 616  Q
    ||||||||| |  |||||| | |||||||||||||||||||| |||| || | |||||||||||  |||||||    
T  31973573 gctagtcccgccgtttattatgatatacccaattgtattgaatctttaatgattaatgaaatgctctaagcac 31973645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 464 - 607
Target Start/End: Original strand, 49499404 - 49499548
Alignment:
Q  464 tttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttatt 562  Q
    |||||||||||| |||||||||||| | ||| | |||| |||||||  |||||   ||| ||| | |||||||| ||||| ||||||| |   |||||||    
T  49499404 tttaccaactctagggtggagtttgctaggcgacaagcaaatgtggctgctcatgttcttgcaagagaagccacgtttctagctagtctcgttatttatt 49499503  T
Q  563 ttcatatacccaattgtattgaaactttgattactaatgaaatgc 607  Q
    || | ||| || ||||||||||| || | |||| |||||||||||    
T  49499504 ttaacatatccgattgtattgaatctcttattattaatgaaatgc 49499548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 78; Significance: 6e-36; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 464 - 624
Target Start/End: Complemental strand, 449 - 288
Alignment:
Q  464 tttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttatt 562  Q
    ||||||||||||||||| ||||||| ||| | ||||||||||||||||| ||| ||||| | ||||||   ||||||||| |||||| || | |||||||    
T  449 tttaccaactctcgggtagagtttgctcgacgataagctaatgtggtggttcatactcttgaaggggagatcacatttcttgctagttccgctatttatt 350  T
Q  563 ttcatatacccaattgtattgaaactttgattactaatgaaatgcattaagcacttttccct 624  Q
    ||||||||||||||||||||||| |||||||||||||||||||    |||||||||||||||    
T  349 ttcatatacccaattgtattgaagctttgattactaatgaaatattataagcacttttccct 288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 3e-28; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 464 - 607
Target Start/End: Original strand, 48770106 - 48770250
Alignment:
Q  464 tttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttatt 562  Q
    |||||||||||| ||||||||||| |||||| | ||||||||| ||| |||||   ||||||||| ||||||||||| |  ||||||||||| |||||||    
T  48770106 tttaccaactctagggtggagtttattcggcgagaagctaatgaggttgctcatgttctcgcaggagaagccacattacaagctagtcccaccatttatt 48770205  T
Q  563 ttcatatacccaattgtattgaaactttgattactaatgaaatgc 607  Q
    ||||||||||| | |||||||||||| | |||| |||||||||||    
T  48770206 ttcatatacccgaatgtattgaaactcttattattaatgaaatgc 48770250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 470 - 607
Target Start/End: Original strand, 32480215 - 32480353
Alignment:
Q  470 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 568  Q
    |||||| |||||||||||||| ||| | |||| || ||||| ||||| ||||| ||| |||| ||||| | | | ||||||||| || |||||||| |||    
T  32480215 aactctagggtggagtttgttaggcgacaagccaacgtggttgctcatactcttgcaagggaggccacgtctttagctagtcccgcagtttattttaata 32480314  T
Q  569 tacccaattgtattgaaactttgattactaatgaaatgc 607  Q
    ||| |||||||||||||||| | |||| |||||||||||    
T  32480315 tactcaattgtattgaaactcttattattaatgaaatgc 32480353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 468 - 607
Target Start/End: Original strand, 15633227 - 15633367
Alignment:
Q  468 ccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttca 566  Q
    ||||||||||||||||||||||| ||| | |||| |||| ||| ||||| ||||| ||| | |||||||| || || |||||||||    |||| ||| |    
T  15633227 ccaactctcgggtggagtttgttaggcgacaagccaatgaggttgctcatactcttgcaagagaagccacgttactagctagtcccgttgtttactttga 15633326  T
Q  567 tatacccaattgtattgaaactttgattactaatgaaatgc 607  Q
     ||||||||||||||||||||| | ||||  ||||||||||    
T  15633327 aatacccaattgtattgaaactattattatcaatgaaatgc 15633367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 544 - 606
Target Start/End: Original strand, 30502581 - 30502643
Alignment:
Q  544 gctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatgaaatg 606  Q
    ||||||||| || |||||||| |||||||| |||||||||||||| | |||| ||||||||||    
T  30502581 gctagtcccgcagtttattttgatatacccgattgtattgaaactcttattattaatgaaatg 30502643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 544 - 625
Target Start/End: Original strand, 3896540 - 3896621
Alignment:
Q  544 gctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatgaaatgcattaagcacttttccctc 625  Q
    ||||||||| |  |||||||| |||||||| |||||||||||||| | |||| |||||||||||  ||||||  ||||||||    
T  3896540 gctagtcccgccgtttattttgatatacccgattgtattgaaactcttattattaatgaaatgctataagcatgtttccctc 3896621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 523 - 605
Target Start/End: Original strand, 27810590 - 27810672
Alignment:
Q  523 gcaggggaagccacatttctcgctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatgaaat 605  Q
    |||||||| |||||||| || ||||||| | |  |||||||| ||||||||| ||||||||||||| | ||||  ||||||||    
T  27810590 gcaggggaggccacattccttgctagtctcgctgtttattttaatatacccagttgtattgaaactattattataaatgaaat 27810672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 460 - 602
Target Start/End: Complemental strand, 73488 - 73345
Alignment:
Q  460 caagtttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatt 558  Q
    |||||| | |||||||||||||||||||| |  |  | |||| |||||||| ||| | || |||||||| ||  |||| ||||| |||||||||    ||    
T  73488 caagttcaacaactctcgggtggagtttgctaagagacaagcaaatgtggttgctgatacactcgcaggagagaccacgtttctagctagtcccgttgtt 73389  T
Q  559 tattttcatatacccaattgtattgaaactttgattactaatga 602  Q
    || ||| |||||||||||||||||||||||||||||| ||||||    
T  73388 tacttttatatacccaattgtattgaaactttgattattaatga 73345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0303 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0303
Description:

Target: scaffold0303; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 470 - 616
Target Start/End: Original strand, 14197 - 14344
Alignment:
Q  470 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 568  Q
    ||||||||||||||||||||| ||| | |||| |||||||| ||||||||| || |  | || ||||||||  | |||||| ||  | |||||| || ||    
T  14197 aactctcgggtggagtttgttaggcgacaagccaatgtggtagctcacactgtccctagagaggccacattattagctagtgccgtagtttattatccta 14296  T
Q  569 tacccaattgtattgaaactttgattactaatgaaatgcattaagcac 616  Q
    ||||||||||||||||| ||| ||||   ||||||||||  |||||||    
T  14297 tacccaattgtattgaatcttcgattgtaaatgaaatgctataagcac 14344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 544 - 607
Target Start/End: Complemental strand, 62553 - 62490
Alignment:
Q  544 gctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatgaaatgc 607  Q
    ||||||||| |  |||||||| |||||| |||||||||||||||| | |||| |||||||||||    
T  62553 gctagtcccgctgtttattttaatatactcaattgtattgaaactcttattattaatgaaatgc 62490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0789 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0789
Description:

Target: scaffold0789; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 544 - 624
Target Start/End: Complemental strand, 4281 - 4201
Alignment:
Q  544 gctagtcccacaatttattttcatatacccaattgtattgaaactttgattactaatgaaatgcattaagcacttttccct 624  Q
    ||||||||| | ||||| | | ||||||||| ||||||||||||| | ||||  ||||||||||  ||||||| |||||||    
T  4281 gctagtcccgccatttaatatgatatacccacttgtattgaaactattattatcaatgaaatgctataagcacgtttccct 4201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University