View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21149_low_4 (Length: 546)
Name: NF21149_low_4
Description: NF21149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21149_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 531
Target Start/End: Original strand, 48258633 - 48259161
Alignment:
| Q |
1 |
atttcctatgacacattcttaacgactctatgcatgtcatgagtgagttaaatcataaaggcttggccggagacgttttatgccctagatgtgccaataa |
100 |
Q |
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| T |
48258633 |
atttcccatgacacattcttaaagactctatgcatgtcatgagtgagttaaatcataaaggcttggccggagacgttttatgccctagatgtgccaataa |
48258732 |
T |
|
| Q |
101 |
agtggaaattgtgaactatctttacatggaaggtgattttggtatgaaggcttggtttggatctacctttggtattcaattcctaaatatcattatgtgt |
200 |
Q |
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| T |
48258733 |
agtggaaattgtgaactatctttacatggaaggtgattttggtatgaaggcttggtttggatctacctttggtattcaattcctaaatatcattatgtgt |
48258832 |
T |
|
| Q |
201 |
gatttcatacactagctgagacagattattggcagtttggatgatgaggccattaaatacacaacgtcgccaatatgtataatatatggtttgcgaggta |
300 |
Q |
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| T |
48258833 |
gatttcatacactagccgagacagattattggcagtttgaatgatgaggccattaaatacacaacgtcgcta--atgtataatatatggtttgcgaggta |
48258930 |
T |
|
| Q |
301 |
caacctgattttttaaagtaaagacattactattttagatactnnnnnnnncaagaagaacaccattttttagtacatacaatgtgataaaatcaataca |
400 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48258931 |
cagcctgattttttaaagtaaagacattactattttagatactataaaaaacaagaagaacaccattttttagtacatacaatgtgataaaatcaataca |
48259030 |
T |
|
| Q |
401 |
aacccctgaaaatcatactaggagagccatataacaaacatatcaaacaagggttttgggaaaaacccatagcagggacggttatagttaacacatatgc |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48259031 |
aacccctgaaaatcatactaggagagccatataacaaacatatcaaacgagggttttgggaaaaacccatagcagggacggttatagttaacacatatgc |
48259130 |
T |
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| Q |
501 |
aaatctatcacaagaatatgcatggagtttg |
531 |
Q |
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| T |
48259131 |
aaatctatcacaagaatatacatggagtttg |
48259161 |
T |
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