View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21149_low_5 (Length: 546)
Name: NF21149_low_5
Description: NF21149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21149_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 467; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Original strand, 41297663 - 41298189
Alignment:
| Q |
1 |
ggtgagtcattttcttctttcacatattcaaaattcatcaccnnnnnnnngaggaacatattgtaataattactatagataataacaataacagtgttat |
100 |
Q |
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| T |
41297663 |
ggtgagtcattttcttctttcacatattcaaaattcatcaccaaaaaaaagaggaacatattgtaataattactatagataataacaataacagtgttat |
41297762 |
T |
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| Q |
101 |
atttgatttttgcagaagaaagttatagaaacaaagagtgttgaattcatgccactaccattatccttgtgtgctttctcagctagtgcttgttggttag |
200 |
Q |
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| T |
41297763 |
atttgatttttgcagaagaaagttatagaaacaaagagtgttgaattcatgccactaccattatccttgtgtgctttctcagctagtgcttgttggttag |
41297862 |
T |
|
| Q |
201 |
tttatggaatccttgttcgtgatgtatttgttgcggttagtttctaaattaatcactctttataatcacattaattaattagtctgtattgnnnnnnnna |
300 |
Q |
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| T |
41297863 |
tttatggaatccttgttcgtgatgtatttgttgcggttagtttctaaattaatcactctttataatcacattaattaattagtatgtattg-ttttttta |
41297961 |
T |
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| Q |
301 |
ttaaattttgctattatgattattacagggtccaagtgtggttggaacacccttaagcattctacagcttgtggtttacttcaaatacagaaaagcaagg |
400 |
Q |
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| T |
41297962 |
ttaaattttgctattatgattattacagggtccaagtgtggttggaacacccttaagcattctacagcttgtggtttacttcaaatacagaaaagcaagg |
41298061 |
T |
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| Q |
401 |
gttgtggaagagccaaaaattggggacttggaaaagggtagcatagagttagagaaggtggtgaaagtggaaaagattgtcacaaattgtgaacaatgtt |
500 |
Q |
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| T |
41298062 |
gttgtggaagagcaaaaaattggggacttggaaaagggtagcatagagttagagaaggtggtgaaagtggaaaagattgtcacaaattgtgaacaatgtt |
41298161 |
T |
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| Q |
501 |
gatgttgttgagggacaaaagtccaagg |
528 |
Q |
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| T |
41298162 |
gatgttgttgagggacaaaagtccaagg |
41298189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 322 - 528
Target Start/End: Original strand, 41307890 - 41308096
Alignment:
| Q |
322 |
attacagggtccaagtgtggttggaacacccttaagcattctacagcttgtggtttacttcaaatacagaaaagcaagggttgtggaagagccaaaaatt |
421 |
Q |
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| T |
41307890 |
attacagggtcctagtctggttggaactcccttaagcatactccagcttgtgatttacttcaaatacagaaaagagagggttatggaagaatcgaaaatt |
41307989 |
T |
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| Q |
422 |
ggggacttggaaaagggtagcatagagttagagaaggtggtgaaagtggaaaagattgtcacaaattgtgaacaatgttgatgttgttgagggacaaaag |
521 |
Q |
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| T |
41307990 |
ggggatttggagaagggtagcatagagttagagaaggtggtgaaagtggaaaagattgtcacaaattgtgaacaatgttgatgttattgagggataaaag |
41308089 |
T |
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| Q |
522 |
tccaagg |
528 |
Q |
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| T |
41308090 |
ttcaagg |
41308096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 102 - 245
Target Start/End: Original strand, 41307659 - 41307802
Alignment:
| Q |
102 |
tttgatttttgcagaagaaagttatagaaacaaagagtgttgaattcatgccactaccattatccttgtgtgctttctcagctagtgcttgttggttagt |
201 |
Q |
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| T |
41307659 |
tttgatttttgcagaagaaagtgatacaaacaaagagtgtggaattcatgccactaccattatctttgtgtgctttttcagctagtgtattctggttagc |
41307758 |
T |
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| Q |
202 |
ttatggaatccttgttcgtgatgtatttgttgcggttagtttct |
245 |
Q |
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| T |
41307759 |
ttatggaatccttgttcgtgatgtatttgttgcggtttgtttct |
41307802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 9610747 - 9610676
Alignment:
| Q |
101 |
atttgatttttgcagaagaaagttatagaaacaaagagtgttgaattcatgccactaccattatccttgtgt |
172 |
Q |
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| T |
9610747 |
atttggttattgcagaaaaaagtgatacaaacaaagagtgtggaattcatgccactacctttatcattgtgt |
9610676 |
T |
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