View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21149_low_6 (Length: 528)
Name: NF21149_low_6
Description: NF21149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21149_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 195 - 471
Target Start/End: Original strand, 34816033 - 34816309
Alignment:
| Q |
195 |
catacttcttacttctcatcaaccattgcacttgaagcaaattgtagacaaataaaattggaaagaataattataaaatgagagctaaaataaagttgca |
294 |
Q |
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| T |
34816033 |
catacttcttacttctcatcaaccattgcacttgaagcaaattgtagaaaaataaaattggaaagaataattataaaatgagagctaaaataaagttgca |
34816132 |
T |
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| Q |
295 |
tgcaacaaaaacggaaatgcaggaaagatagaaagaacttacatagcaaaaaagttaaaacatagagccaaacacagcttatgcaattccaactaagcaa |
394 |
Q |
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| T |
34816133 |
tgcaacaaaaacggaaatgcaggaaagatagaaagaacttacatagcaaaaaagttaaaacatagaaccaaaaacagcttatgcaattccaactaagcaa |
34816232 |
T |
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| Q |
395 |
gattatttgtgtacaaaatgataaagagnnnnnnncaggattgaagttgaagaatgacaacaagaatagtacataat |
471 |
Q |
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| T |
34816233 |
gattatttgtgtacaaaatgataaagagaaaaaaacaggattgaagttgaagaatgacaacaagaatagtacataat |
34816309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 10 - 158
Target Start/End: Original strand, 34815848 - 34815996
Alignment:
| Q |
10 |
aagaaaattagcaacttgagatcacaagcaagaggatatattgtactagacgtggacaccattaattaacaatttctcaaatgcattactaaatattatc |
109 |
Q |
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| T |
34815848 |
aagaaaattagcaacttgagatcacaagcaagaggatatattgtactagacgtggacaccattaattaacaatttctcaaatgcattactaaatattatc |
34815947 |
T |
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| Q |
110 |
aacatcaaatcaacctacattccaaaaatattatcaactcaattactag |
158 |
Q |
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| T |
34815948 |
aacatcaaatcaacctacattccaaaaatattataaactcaattactag |
34815996 |
T |
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