View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21149_low_8 (Length: 491)
Name: NF21149_low_8
Description: NF21149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21149_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 2e-78; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 3 - 159
Target Start/End: Complemental strand, 27752351 - 27752195
Alignment:
| Q |
3 |
tcccgaatatccacattgtcatatggaacaatgtcattgcgtttaagcatgaaaattaagttaaaataaatttcatgttacttctaattagtttataatt |
102 |
Q |
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| T |
27752351 |
tcccgaatatccacattgtcatatggaacaatgtcattgcgtttaagcatgaaaattaagttaaaataaatttcatgttacttctaattagtttataatt |
27752252 |
T |
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| Q |
103 |
tatcatggacatcacaatgtttttccaaattttaaaatttctcgcattttaatttat |
159 |
Q |
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| T |
27752251 |
tatcatgggcatcacaatgtttttccaaatttaaaaatttctcgcattttaatttat |
27752195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 351 - 432
Target Start/End: Complemental strand, 27752189 - 27752108
Alignment:
| Q |
351 |
tgtgacctttcttatttgaaaagattatgcttctaggaccttcttctcaaaagcgtgatacaactatattataatacaagta |
432 |
Q |
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| T |
27752189 |
tgtgacctttcttatttgaaaagattatgcttctaggaccttgttctcaaaagcgtgatgcaactatattataatacaagta |
27752108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 481
Target Start/End: Complemental strand, 27752096 - 27752065
Alignment:
| Q |
450 |
aaagaattattatgcaagtattgttacctttg |
481 |
Q |
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| T |
27752096 |
aaagaattattatgcaagtattgttacctttg |
27752065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 167 - 290
Target Start/End: Original strand, 12640943 - 12641067
Alignment:
| Q |
167 |
ttcttgtgaagcgaggagctctttcaaatgttggtttatcgcgacaccattcccctcc-gacgacctgcttcctttgttgaagaatgatggttcagaaac |
265 |
Q |
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| T |
12640943 |
ttcttgcgaagtgaggagctctatcaaatgttggtttatcgcgacaccattcccctcctgacgacctgcttcctttgttgaagaatgatgcttcaggaac |
12641042 |
T |
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| Q |
266 |
ttggttcctgagatcttaattctcg |
290 |
Q |
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| T |
12641043 |
ttggttcctgagatcttagttctcg |
12641067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 167 - 283
Target Start/End: Original strand, 3422663 - 3422779
Alignment:
| Q |
167 |
ttcttgtgaagcgaggagctctttcaaatgttggtttatcgcgacaccattcccctccgacgacctgcttcctttgttgaagaatgatggttcagaaact |
266 |
Q |
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| T |
3422663 |
ttcttgcgaagcgaggagctctatcaaatgttggtttaccgcgacaccattcccccctgacgacctgcttcctttgttgaagaatgatgtttcaggaact |
3422762 |
T |
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| Q |
267 |
tggttcctgagatctta |
283 |
Q |
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| T |
3422763 |
tggttcctgagatctta |
3422779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 331
Target Start/End: Original strand, 3422808 - 3422838
Alignment:
| Q |
301 |
tgtctttttcttgtttatttgcttctgtaac |
331 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
3422808 |
tgtctttttcttgtttatttgcttctgtaac |
3422838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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