View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21149_low_9 (Length: 481)
Name: NF21149_low_9
Description: NF21149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21149_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 144 - 465
Target Start/End: Complemental strand, 42209763 - 42209440
Alignment:
| Q |
144 |
gatgttagtagcaccgttaacattacttaatttgggttctgcagcaacatgtgtagatggtaatttccagttcacggggaatgtcaaaatgtcccaccag |
243 |
Q |
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| T |
42209763 |
gatgttagtagccccgttaacattacttaatttgggttctgcagcaacatgtgtagatggtaatttccagttcacggggaatgtcaaaatgtcccaccag |
42209664 |
T |
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| Q |
244 |
gtctactctctatctgtttgcatttactcaagatgccatttcatatcattgctttctgttgtggattagacgtcataaggcaaatattaattctttctta |
343 |
Q |
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| T |
42209663 |
gtctactctctatctgtttgcatttactcaagatgccatttcatatcattgctttctgttgtggattagacgtcataaggcaaatattaattctttctta |
42209564 |
T |
|
| Q |
344 |
gaggattgattgagannnnnnnaaaagtattaaacaaaaagttaagacctattaagtgactttctagaatggtgctagca--acactctttgattggtta |
441 |
Q |
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| T |
42209563 |
gaggattgattgagatttttttaaaagtattaaacaaaaagttaagacctattaagtgactttctagaatggtgctagcaacacactctttgattggtta |
42209464 |
T |
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| Q |
442 |
aatttcacatggttcccaccatat |
465 |
Q |
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| T |
42209463 |
aaattcacatggttcccaccatat |
42209440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 42209893 - 42209835
Alignment:
| Q |
11 |
cagagactatgaaaccccctgatattagcactacatctaccaaaggcaagtcatgacgg |
69 |
Q |
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| T |
42209893 |
cagagactatgaaaccccctgatattagcactacatctaccaaaggcaagtcatgacgg |
42209835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 462
Target Start/End: Complemental strand, 33171716 - 33171681
Alignment:
| Q |
427 |
ctctttgattggttaaatttcacatggttcccacca |
462 |
Q |
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| T |
33171716 |
ctctttgattggttaaatttcacatgggtcccacca |
33171681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 427 - 465
Target Start/End: Original strand, 35244862 - 35244900
Alignment:
| Q |
427 |
ctctttgattggttaaatttcacatggttcccaccatat |
465 |
Q |
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| T |
35244862 |
ctctttgattggttaaaattcacatggatcccaccatat |
35244900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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