View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2114_high_14 (Length: 337)
Name: NF2114_high_14
Description: NF2114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2114_high_14 |
 | |
|
| [»] scaffold0264 (1 HSPs) |
| | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 19 - 315
Target Start/End: Complemental strand, 20205493 - 20205197
Alignment:
| Q |
19 |
gtaatgtaaggtatgaattatatccattttataggtctattactgttctttcaccaaatgagctagctcctcgaacaaatgattccaaacaagattctaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20205493 |
gtaatgtaaggtatgaattatatccattttataggtctattactgttctttcaccaaatgagctagctcctcgaacaaatgattccaaacaagattctaa |
20205394 |
T |
|
| Q |
119 |
actttcagaagaatcattttatctttcctataattgctcaagaaaccacaacacaatcactgacaaaaacatcaaattacttctgtcttatttgttgtcg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20205393 |
actttcagaagaatcattttatctttcctataattgctcaagaaaccacaacacaatcactgacaaaaacatcaaattacttctgtcttatttgttgtcg |
20205294 |
T |
|
| Q |
219 |
aacgccaccatcggcaaaaaatttcatagccttaaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttccttctagactctgtg |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20205293 |
aacgccaccatcggcaaaaaatttcatagccttaaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttccttctagactctgtg |
20205197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 19 - 315
Target Start/End: Complemental strand, 22099516 - 22099220
Alignment:
| Q |
19 |
gtaatgtaaggtatgaattatatccattttataggtctattactgttctttcaccaaatgagctagctcctcgaacaaatgattccaaacaagattctaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22099516 |
gtaatgtaaggtatgaattatatccattttataggtctattactgttctttcaccaaatgagctagctcctcgaacaaatgattccaaacaagattctaa |
22099417 |
T |
|
| Q |
119 |
actttcagaagaatcattttatctttcctataattgctcaagaaaccacaacacaatcactgacaaaaacatcaaattacttctgtcttatttgttgtcg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22099416 |
actttcagaagaatcattttatctttcctataattgctcaagaaaccacaacacaatcactgacaaaaacatcaaattacttctgtcttatttgttgtcg |
22099317 |
T |
|
| Q |
219 |
aacgccaccatcggcaaaaaatttcatagccttaaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttccttctagactctgtg |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22099316 |
aacgccaccatcggcaaaaaatttcatagccttaaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttccttctagactctgtg |
22099220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 21972057 - 21971772
Alignment:
| Q |
19 |
gtaatgtaaggtatgaattatatccattttataggtctattactgttctttcaccaaatgagctagctcctcgaacaaatgattccaaacaagattctaa |
118 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| | ||||||||| ||||||||||| ||||||| |||||||||||||| |||||||||||| |
|
|
| T |
21972057 |
gtaatgttaggtatgaattatatccattttataggtctacttatgttctttccccaaatgagcttgctcctcaaacaaatgattccatacaagattctaa |
21971958 |
T |
|
| Q |
119 |
a---ctttcagaagaatcattttatctttcctataattgctcaagaaaccacaacacaatcactgacaaaaacatcaaattacttctgtcttatttgttg |
215 |
Q |
| |
|
| ||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
21971957 |
aatactttcagaagatccattttatctttcctataattgctcaagaaattacaatacaatcactgacaaaaacatcaaactacttctgtcttatttgttg |
21971858 |
T |
|
| Q |
216 |
tcgaacgccaccatcggcaaaaaatttcatagccttaaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttcc |
301 |
Q |
| |
|
||||||||||||||||||||||||||| || | ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
21971857 |
tcgaacgccaccatcggcaaaaaattttattggcttaaagtggaagaaattgcgtatggtctcttcatgtgtcgaggtgatcttcc |
21971772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 302
Target Start/End: Complemental strand, 20086173 - 20085890
Alignment:
| Q |
19 |
gtaatgtaaggtatgaattatatccattttataggtctattactgttctttcaccaaatgagctagctcctcgaacaaatgattccaaacaagattctaa |
118 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||| || || ||| ||||||||||| | ||||| ||||||| |||| || |||||||||| |
|
|
| T |
20086173 |
gtaatgttaggtatgaattatatcctttttataggtctattaatgctccttcgccaaatgagcttgttcctcaaacaaatcattcaaaccaagattctag |
20086074 |
T |
|
| Q |
119 |
actttcagaagaatcattttatctttcctataattgctcaagaaaccacaacacaatcactgacaaaaacatcaaattacttctgtcttatttgttgtcg |
218 |
Q |
| |
|
| ||||| |||| || ||||||||||||||||||||||||||||| ||| ||||||||| |||| ||| ||||||||||||| |||||| ||| || |
|
|
| T |
20086073 |
attttcacaagatccaatttatctttcctataattgctcaagaaacaacagtacaatcactaacaataacttcaaattacttctctcttatctgtcctcc |
20085974 |
T |
|
| Q |
219 |
aacgccaccatcggcaaaaaatttcatagccttaaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttcct |
302 |
Q |
| |
|
|||||||| | ||| |||||||| ||| |||||||||| ||||| ||||| || |||||| ||||||||||||| |||||| |
|
|
| T |
20085973 |
aacgccacaaatggcgaaaaattttatactgttaaagtggatgaaatggtgtacggcctcttcttgtgtcgaggtgaccttcct |
20085890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 27 - 301
Target Start/End: Original strand, 22204998 - 22205272
Alignment:
| Q |
27 |
aggtatgaattatatccattttataggtctattactgttctttcaccaaatgagctagctcctcgaacaaatgattccaaacaagattctaaactttcag |
126 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||| || || ||||||||||||||| | ||||| ||||||| |||| | |||||||||| | ||||| |
|
|
| T |
22204998 |
aggtatgaactatatcctttttataggtctattaatgctccttcaccaaatgagcttgttcctcaaacaaatcattcaacccaagattctagattttcac |
22205097 |
T |
|
| Q |
127 |
aagaatcattttatctttcctataattgctcaagaaaccacaacacaatcactgacaaaaacatcaaattacttctgtcttatttgttgtcgaacgccac |
226 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| | ||||||| |||||||| ||||||||||||| |||||||||| || |||||||| |
|
|
| T |
22205098 |
aagatccattttatctttcctataattgctcaagaaaccacagtaaaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccac |
22205197 |
T |
|
| Q |
227 |
catcggcaaaaaatttcatagccttaaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttcc |
301 |
Q |
| |
|
| ||| ||| || || | | |||||||||||||| ||||| || |||||||||||||||||||| ||||| |
|
|
| T |
22205198 |
aaatggcggaaatttccaaaaagtaaaagtggaagaaatggtgtacggcctcttcatgtgtcgaggtgaccttcc |
22205272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 27 - 301
Target Start/End: Original strand, 24385210 - 24385484
Alignment:
| Q |
27 |
aggtatgaattatatccattttataggtctattactgttctttcaccaaatgagctagctcctcgaacaaatgattccaaacaagattctaaactttcag |
126 |
Q |
| |
|
||||||||| ||| ||| ||||||| ||||||| || || |||| |||||||||| | ||||| |||||||||||| ||||||||||||| | ||||| |
|
|
| T |
24385210 |
aggtatgaactatttcctttttataaatctattattgctccttcatcaaatgagcttgttcctcaaacaaatgattcaaaacaagattctagattttcac |
24385309 |
T |
|
| Q |
127 |
aagaatcattttatctttcctataattgctcaagaaaccacaacacaatcactgacaaaaacatcaaattacttctgtcttatttgttgtcgaacgccac |
226 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||||||||| | |||||| || | ||| ||||||||||||| |||||| ||| || |||||||| |
|
|
| T |
24385310 |
aagatccaatttatctttcctataattgctcaagaaaccacaatataatcacaaacgataacttcaaattacttctctcttatctgtcctccaacgccac |
24385409 |
T |
|
| Q |
227 |
catcggcaaaaaatttcatagccttaaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttcc |
301 |
Q |
| |
|
| ||||||||||| ||| | |||||||||||||| ||||| || |||||||||||||||||||| ||||| |
|
|
| T |
24385410 |
aaatggcaaaaaattctatactgtaaaagtggaagaaatggtgtacggcctcttcatgtgtcgaggtgaccttcc |
24385484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 27 - 302
Target Start/End: Complemental strand, 20238078 - 20237803
Alignment:
| Q |
27 |
aggtatgaattatatccattttataggtctattactgttctttcaccaaatgagctagctcctcgaacaaatgattccaaacaagattctaaactttcag |
126 |
Q |
| |
|
|||||||| ||||||| |||||||| |||| || || || ||||| ||||||||| | ||||| |||||||||||| |||||||||||||| || || |
|
|
| T |
20238078 |
aggtatgagctatatcctttttatagatctactaatgctccttcactaaatgagcttgttcctcaaacaaatgattcaaaacaagattctaattttacac |
20237979 |
T |
|
| Q |
127 |
aagaatcattttatctttcctataattgctcaagaaaccacaacacaatcactgacaaaaacatcaaattacttctgtcttatttgttgtcgaacgccac |
226 |
Q |
| |
|
|||| || ||||||||||| |||||||| |||||||||||| ||||||||| |||||||| ||||||||||||| |||||||||| || |||||||| |
|
|
| T |
20237978 |
aagatccagtttatctttccgataattgcccaagaaaccacagtacaatcactaacaaaaacttcaaattacttctctcttatttgtcttccaacgccac |
20237879 |
T |
|
| Q |
227 |
catcggcaaaaaatttcatagccttaaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttcct |
302 |
Q |
| |
|
| |||| || ||| |||| |||||||||||||| ||||| || |||||| ||||||||||||| |||||| |
|
|
| T |
20237878 |
aaatggcacaacattccatattgctaaagtggaagaaaaggtgtacggcctcttcttgtgtcgaggtgaccttcct |
20237803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 27 - 302
Target Start/End: Complemental strand, 22132062 - 22131787
Alignment:
| Q |
27 |
aggtatgaattatatccattttataggtctattactgttctttcaccaaatgagctagctcctcgaacaaatgattccaaacaagattctaaactttcag |
126 |
Q |
| |
|
|||||||| ||||||| |||||||| |||| || || || ||||| ||||||||| | ||||| |||||||||||| |||||||||||||| || || |
|
|
| T |
22132062 |
aggtatgagctatatcctttttatagatctactaatgctccttcactaaatgagcttgttcctcaaacaaatgattcaaaacaagattctaattttacac |
22131963 |
T |
|
| Q |
127 |
aagaatcattttatctttcctataattgctcaagaaaccacaacacaatcactgacaaaaacatcaaattacttctgtcttatttgttgtcgaacgccac |
226 |
Q |
| |
|
|||| || ||||||||||| |||||||| |||||||||||| ||||||||| |||||||| ||||||||||||| |||||||||| || |||||||| |
|
|
| T |
22131962 |
aagatccagtttatctttccgataattgcccaagaaaccacagtacaatcactaacaaaaacttcaaattacttctctcttatttgtcttccaacgccac |
22131863 |
T |
|
| Q |
227 |
catcggcaaaaaatttcatagccttaaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttcct |
302 |
Q |
| |
|
| |||| || ||| |||| |||||||||||||| ||||| || |||||| ||||||||||||| |||||| |
|
|
| T |
22131862 |
aaatggcacaacattccatattgctaaagtggaagaaaaggtgtacggcctcttcttgtgtcgaggtgaccttcct |
22131787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 16122 - 15841
Alignment:
| Q |
19 |
gtaatgtaaggtatgaattatatccattttataggtctattactgttctttcaccaaatgagctagctcctcgaacaaatgattccaaacaagattctaa |
118 |
Q |
| |
|
||||||| ||||||||| ||||||| |||||||||||||||| || || ||| ||||||||||| | ||||| ||||||| |||| || |||||||||| |
|
|
| T |
16122 |
gtaatgttaggtatgaactatatcctttttataggtctattaatgctccttcgccaaatgagcttgttcctcaaacaaatcattcaaaccaagattctag |
16023 |
T |
|
| Q |
119 |
actttcagaagaatcattttatctttcctataattgctcaagaaaccacaacacaatcactgacaaaaacatcaaattacttctgtcttatttgttgtcg |
218 |
Q |
| |
|
| ||||| |||| || ||||||||||||||||||||||||||||| ||| ||||||||| |||| ||| ||||||||||||| |||||| ||| || |
|
|
| T |
16022 |
attttcacaagatccaatttatctttcctataattgctcaagaaacaacagtacaatcactaacaataacttcaaattacttctctcttatctgtcctcc |
15923 |
T |
|
| Q |
219 |
aacgccaccatcggcaaaaaatttcatagccttaaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttcc |
301 |
Q |
| |
|
|||||||| || |||| ||| || || | | |||||||||||||| ||||| || |||||||||||||||||||| ||||| |
|
|
| T |
15922 |
aacgccacaat-ggcagaaatttccaaaaagtaaaagtggaagaaatggtgtacggcctcttcatgtgtcgaggtgaccttcc |
15841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 19 - 301
Target Start/End: Original strand, 47819 - 48098
Alignment:
| Q |
19 |
gtaatgtaaggtatgaattatatccattttataggtctattactgttctttcaccaaatgagctagctcctcgaacaaatgattccaaacaagattctaa |
118 |
Q |
| |
|
||||||| ||||||||| ||||||| |||||||||||||| | | | |||||||||||||| | ||||| |||||| |||| ||||||||||||| |
|
|
| T |
47819 |
gtaatgttaggtatgaactatatcctttttataggtctatcaatact---tcaccaaatgagcttgttcctcaaacaaaacattcaaaacaagattctag |
47915 |
T |
|
| Q |
119 |
actttcagaagaatcattttatctttcctataattgctcaagaaaccacaacacaatcactgacaaaaacatcaaattacttctgtcttatttgttgtcg |
218 |
Q |
| |
|
| ||||| |||| || |||||||||||||||||||| |||||||||||| ||||||||| | |||||| ||||||||||||| |||||||||| || |
|
|
| T |
47916 |
attttcacaagatccaatttatctttcctataattgcccaagaaaccacagtacaatcactaagaaaaacttcaaattacttctctcttatttgtcctcc |
48015 |
T |
|
| Q |
219 |
aacgccaccatcggcaaaaaatttcatagccttaaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttcc |
301 |
Q |
| |
|
|||||||| | ||| |||||| |||| |||||||||||||||| ||||||| |||||||||||||||||||| ||||| |
|
|
| T |
48016 |
aacgccacaaatggcgaaaaatcccatactgttaaagtggaagaaatgctgtatggcctcttcatgtgtcgaggtgaccttcc |
48098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 27 - 301
Target Start/End: Original strand, 5348 - 5625
Alignment:
| Q |
27 |
aggtatgaattatatccattttataggtctat---tactgttctttcaccaaatgagctagctcctcgaacaaatgattccaaacaagattctaaacttt |
123 |
Q |
| |
|
||||||||| ||||||| |||||||||||||| |||| | ||||||||||||||| | ||||| |||||| |||| ||||||||| ||| | ||| |
|
|
| T |
5348 |
aggtatgaactatatcctttttataggtctatcaatactacttcttcaccaaatgagcttgttcctcaaacaaactattcaaaacaagatactagatttt |
5447 |
T |
|
| Q |
124 |
cagaagaatcattttatctttcctataattgctcaagaaaccacaacacaatcactgacaaaaacatcaaattacttctgtcttatttgttgtcgaacgc |
223 |
Q |
| |
|
|| |||| | |||||||||||||||||||||||||||||||| | ||||||||| | |||||| ||||||||||||| |||||||||| || ||||| |
|
|
| T |
5448 |
caaaagatcccttttatctttcctataattgctcaagaaaccaaagtacaatcactaagaaaaacttcaaattacttctctcttatttgtcctccaacgc |
5547 |
T |
|
| Q |
224 |
caccatcggcaaaaaatttcatagccttaaagtggaagaaattgtgtatggtctcttcatgtgtcgaggtgatcttcc |
301 |
Q |
| |
|
||| | ||| |||||| |||| ||||||||||||||| ||||||| |||||||||||||||||||| ||||| |
|
|
| T |
5548 |
cacaaatggcgaaaaatcccatactgttaaagtggaagaaacgctgtatggcctcttcatgtgtcgaggtgaccttcc |
5625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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