View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2114_high_20 (Length: 267)

Name: NF2114_high_20
Description: NF2114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2114_high_20
NF2114_high_20
[»] chr7 (5 HSPs)
chr7 (18-248)||(12419741-12419971)
chr7 (65-168)||(7398156-7398260)
chr7 (66-138)||(38971140-38971212)
chr7 (57-165)||(36903588-36903695)
chr7 (65-165)||(9021962-9022063)
[»] chr5 (6 HSPs)
chr5 (18-165)||(11242560-11242714)
chr5 (51-148)||(2024922-2025019)
chr5 (56-165)||(15639160-15639271)
chr5 (18-162)||(10543392-10543540)
chr5 (100-168)||(34307416-34307484)
chr5 (49-166)||(34425609-34425727)
[»] chr2 (5 HSPs)
chr2 (44-165)||(11952884-11953009)
chr2 (102-168)||(21666033-21666099)
chr2 (50-164)||(12134312-12134426)
chr2 (67-165)||(29694087-29694185)
chr2 (96-156)||(24035863-24035923)
[»] chr1 (2 HSPs)
chr1 (18-165)||(39134967-39135125)
chr1 (53-138)||(50146068-50146154)
[»] scaffold0097 (1 HSPs)
scaffold0097 (56-164)||(38798-38907)
[»] chr4 (3 HSPs)
chr4 (18-160)||(15734807-15734959)
chr4 (56-162)||(27111747-27111854)
chr4 (51-170)||(4168147-4168268)
[»] chr8 (6 HSPs)
chr8 (99-162)||(7944763-7944826)
chr8 (99-165)||(25562010-25562076)
chr8 (51-163)||(34048992-34049103)
chr8 (108-170)||(5973367-5973429)
chr8 (99-165)||(38009479-38009545)
chr8 (121-165)||(8645917-8645961)
[»] chr6 (3 HSPs)
chr6 (56-162)||(2477869-2477976)
chr6 (99-162)||(20611510-20611573)
chr6 (59-171)||(4036783-4036896)
[»] scaffold0007 (1 HSPs)
scaffold0007 (99-166)||(232544-232611)
[»] scaffold1590 (1 HSPs)
scaffold1590 (99-168)||(432-501)
[»] chr3 (1 HSPs)
chr3 (99-164)||(23641460-23641525)


Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 12419741 - 12419971
Alignment:
Q  18 gatggaacgcatggtatcagagagaaaaagaaattttgtttttagtagggtagtacttagtagtattaccggcctatattattttttaggcccatacctt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12419741 gatggaacgcatggtatcagagagaaaaagaaattttgtttttagtagggtagtacttagtagtattaccggcctatatttttttttaggcccatacctt 12419840  T
Q  118 ggtgaggcccagttccattgaactccttgcagaccccaaggtccggccttgctctacatataactcacaaatcagagcaaagagttctctaaatttttag 217  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12419841 ggtgaggcccggttccattgaactccttgcagaccccaaggtccggccctgctctacatataactcacaaatcagagcaaagagttctctaaatttttag 12419940  T
Q  218 aatttctttctctctcctccccctctccccc 248  Q
    |||||||||||||||||||||||||||||||    
T  12419941 aatttctttctctctcctccccctctccccc 12419971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 168
Target Start/End: Complemental strand, 7398260 - 7398156
Alignment:
Q  65 gggtagtacttagtagtattaccggcctatattattt-tttaggcccataccttggtgaggcccagttccattgaactccttgcagaccccaaggtccgg 163  Q
    |||||||||||||||||| ||| || |||||   ||| |||||||||||||||||| ||||| ||| |||||||| ||| ||||| |||||||||||||     
T  7398260 gggtagtacttagtagtactactgggctataaattttatttaggcccataccttggggaggctcagctccattgagctcgttgcacaccccaaggtccga 7398161  T
Q  164 ccttg 168  Q
    |||||    
T  7398160 ccttg 7398156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 66 - 138
Target Start/End: Complemental strand, 38971212 - 38971140
Alignment:
Q  66 ggtagtacttagtagtattaccggcctatattattttttaggcccataccttggtgaggcccagttccattga 138  Q
    ||||||||||||||||||||| || ||||||| ||||||||||| |||| |||| ||| ||||||||||||||    
T  38971212 ggtagtacttagtagtattactgggctatatttttttttaggccaatactttggggagacccagttccattga 38971140  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 165
Target Start/End: Original strand, 36903588 - 36903695
Alignment:
Q  57 ttttagtagggtagtacttagtagtattaccggcctat-attattttttaggcccataccttggtgaggcccagttccattgaactccttgcagacccca 155  Q
    |||||||||||||||||||||||||| ||| || |||| |||  ||||||| |  ||||||||| ||||||||| || ||||| ||| ||||  ||||||    
T  36903588 ttttagtagggtagtacttagtagtactactggactataatttatttttagacttataccttggagaggcccagctcaattgagctctttgc--acccca 36903685  T
Q  156 aggtccggcc 165  Q
    || |||||||    
T  36903686 agatccggcc 36903695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 165
Target Start/End: Original strand, 9021962 - 9022063
Alignment:
Q  65 gggtagtacttagtagtattaccggcctat-attattttttaggcccataccttggtgaggcccagttccattgaactccttgcagaccccaaggtccgg 163  Q
    |||||||||||||||||| ||| || |||| ||| |||||||| |||||| || || ||||||||| |||| ||| ||  ||| | |||||||||| |||    
T  9021962 gggtagtacttagtagtactactgggctataatttttttttagacccataactgggggaggcccagctccactgagctgtttgtaaaccccaaggttcgg 9022061  T
Q  164 cc 165  Q
    ||    
T  9022062 cc 9022063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 11242560 - 11242714
Alignment:
Q  18 gatggaacgcatggtatcagagagaaa-----aagaaattttgttttta--gtagggtagtacttagtagtattaccggcctatattattttttaggccc 110  Q
    |||||||||| |||||| |||||||||     ||||| |||||||||||  || ||||||||||||| |||| ||| ||  |||||| ||||||||||||    
T  11242560 gatggaacgcgtggtatgagagagaaagaataaagaatttttgtttttatagtggggtagtacttagcagtactactgggttatatttttttttaggccc 11242659  T
Q  111 ataccttggtgaggcccagttccattgaactccttgcagaccccaaggtccggcc 165  Q
    ||||||||| |||||| ||||||||||||||||||||| ||| ||||||||||||    
T  11242660 ataccttggagaggccaagttccattgaactccttgcacacctcaaggtccggcc 11242714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 51 - 148
Target Start/End: Original strand, 2024922 - 2025019
Alignment:
Q  51 ttttgtttttagtagggtagtacttagtagtattaccggcctatattattttttaggcccataccttggtgaggcccagttccattgaactccttgca 148  Q
    ||||||||||||| |||||||||||||||||| ||| || ||||| | |||||||| |||||||||||| ||||| |||||| ||||| |||||||||    
T  2024922 ttttgtttttagtggggtagtacttagtagtactactgggctataattttttttagacccataccttggggaggcgcagttctattgagctccttgca 2025019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 165
Target Start/End: Complemental strand, 15639271 - 15639160
Alignment:
Q  56 tttttagtagggtagtacttagtagtattaccggcctata--ttattttttaggcccataccttggtgaggcccagttccattgaactccttgcagaccc 153  Q
    |||||||| |||||||||||||||||| ||| || |||||  || ||||||||||||||||||||| |||  ||||||||||||| ||||||||| |||     
T  15639271 tttttagtggggtagtacttagtagtactactggactataattttttttttaggcccataccttggggagctccagttccattgagctccttgcacacct 15639172  T
Q  154 caaggtccggcc 165  Q
    |||||| |||||    
T  15639171 caaggtacggcc 15639160  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 10543540 - 10543392
Alignment:
Q  18 gatggaacgcatggtatcagagagaaaaaga--aattttgtttttagtagggtagtacttagtagtattaccggcctata--ttattttttaggcccata 113  Q
    |||||||||||||||||| |||||||| |||  || ||| ||||||||||||||||| ||||||||| |||  | |||||  |||||||| | || ||||    
T  10543540 gatggaacgcatggtatccgagagaaagagaataagtttttttttagtagggtagtatttagtagtactactaggctataatttatttttgaagctcata 10543441  T
Q  114 ccttggtgaggcccagttccattgaactccttgcagaccccaaggtccg 162  Q
    |||||  |||||||  ||| ||||| ||||||||| |||| || |||||    
T  10543440 ccttgaggaggcccgattctattgagctccttgcacaccctaaagtccg 10543392  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 168
Target Start/End: Original strand, 34307416 - 34307484
Alignment:
Q  100 tttttaggcccataccttggtgaggcccagttccattgaactccttgcagaccccaaggtccggccttg 168  Q
    |||| |||||||||||| |  |||| || |||||||||| || |||||  |||||||||||||||||||    
T  34307416 ttttgaggcccatacctcgaggaggtccggttccattgagcttcttgcgcaccccaaggtccggccttg 34307484  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 166
Target Start/End: Complemental strand, 34425727 - 34425609
Alignment:
Q  49 aattttgtttttagtagggtagtacttagtagtattaccggcctat--attattttttaggcccataccttggtgaggcccagttccattgaactccttg 146  Q
    ||||||||||||||| ||||||||||||||| || ||| || ||||  ||| ||||| |  | ||||||||||  || |||||||| ||||| ||| |||    
T  34425727 aattttgtttttagtggggtagtacttagtaatactactgggctataaattttttttgaaactcataccttgggaagacccagttcaattgagctctttg 34425628  T
Q  147 cagaccccaaggtccggcct 166  Q
    || | |||||||| ||||||    
T  34425627 caca-cccaaggttcggcct 34425609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 44 - 165
Target Start/End: Original strand, 11952884 - 11953009
Alignment:
Q  44 aaagaaattttgtttttagtagggtagtacttagtagtattaccggcctata----ttattttttaggcccataccttggtgaggcccagttccattgaa 139  Q
    |||||| ||||||||||||| | |||||||||||||||| ||| || |||||    |||||||| |||| |||||||||| ||||||||||||||||||     
T  11952884 aaagaatttttgtttttagtggagtagtacttagtagtactacagggctataaattttatttttgaggctcataccttggggaggcccagttccattgag 11952983  T
Q  140 ctccttgcagaccccaaggtccggcc 165  Q
    ||||||||| |||||||||| |||||    
T  11952984 ctccttgcacaccccaaggttcggcc 11953009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 102 - 168
Target Start/End: Original strand, 21666033 - 21666099
Alignment:
Q  102 tttaggcccataccttggtgaggcccagttccattgaactccttgcagaccccaaggtccggccttg 168  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||    
T  21666033 tttaggcccataccttggggaggcccagttccattgagctccttgcacaccccaaggtccggccttg 21666099  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 164
Target Start/End: Original strand, 12134312 - 12134426
Alignment:
Q  50 attttgtttttagtagggtagtacttagtagtattaccggcctatattattttttaggcccataccttggtgaggcccagttccattgaactccttgcag 149  Q
    ||||| |||||| |||| ||||||||||||||| ||  || ||||| | ||||||  | ||||||||||  ||||||| |||||||||| || ||||||     
T  12134312 attttttttttaataggatagtacttagtagtactattgggctataattttttttgaggccataccttgaagaggcccggttccattgaccttcttgcac 12134411  T
Q  150 accccaaggtccggc 164  Q
    ||||||| |||||||    
T  12134412 accccaaagtccggc 12134426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 165
Target Start/End: Complemental strand, 29694185 - 29694087
Alignment:
Q  67 gtagtacttagtagtattaccggcctatattattttttaggcccataccttggtgaggcccagttccattgaactccttgcagaccccaaggtccggcc 165  Q
    |||||||||||||||| ||  || ||||| | |||||||| ||||||||||   ||||||||| |||||||| ||| ||||| |||||||||| |||||    
T  29694185 gtagtacttagtagtactagtgggctataattttttttagacccataccttaaggaggcccagctccattgagctctttgcacaccccaaggtgcggcc 29694087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 24035863 - 24035923
Alignment:
Q  96 ttattttttaggcccataccttggtgaggcccagttccattgaactccttgcagaccccaa 156  Q
    ||||||||||||| || ||||||| ||||||| |||||||||| ||||||||| |||||||    
T  24035863 ttattttttaggctcacaccttggggaggcccggttccattgagctccttgcacaccccaa 24035923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 39134967 - 39135125
Alignment:
Q  18 gatggaacgcatggtatcagagagaaaaa-----gaaattt---tgtttttagtagggtagtacttagtagtattaccggcctata---ttattttttag 106  Q
    ||||||||||||||||||||||||||| |     |||||||   | |||||| | |||||||||||||||||| ||| || |||||   || ||||| ||    
T  39134967 gatggaacgcatggtatcagagagaaagaataaggaaatttgtttttttttactggggtagtacttagtagtactactgggctataattttgtttttgag 39135066  T
Q  107 gcccataccttggtgaggcccagttccattgaactccttgcagaccccaaggtccggcc 165  Q
    ||||||||||||| |||||||||||||||||| ||| ||||| |||||||||| |||||    
T  39135067 gcccataccttggggaggcccagttccattgagctctttgcacaccccaaggttcggcc 39135125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 138
Target Start/End: Complemental strand, 50146154 - 50146068
Alignment:
Q  53 ttgtttttagtagggtagtacttagtagtattaccggcctat-attattttttaggcccataccttggtgaggcccagttccattga 138  Q
    ||||| ||||| ||||||||||||||||||  || || |||| ||| ||||||||||  ||||||| ||||||||||  ||||||||    
T  50146154 ttgttattagtggggtagtacttagtagtaccactgggctataatttttttttaggctgataccttagtgaggcccaactccattga 50146068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 56 - 164
Target Start/End: Complemental strand, 38907 - 38798
Alignment:
Q  56 tttttagtagggtagtacttagtagtattaccggcctatattatttttt-aggcccataccttggtgaggcccagttccattgaactccttgcagacccc 154  Q
    ||||||||||||||  ||||||||||| ||| || ||||| | |||||| |||||||||||||||  || |||||||||||||||||||||||| |||||    
T  38907 tttttagtagggtaacacttagtagtactactggactataattttttttgaggcccataccttgggaagacccagttccattgaactccttgcacacccc 38808  T
Q  155 aaggtccggc 164  Q
    || |||||||    
T  38807 aaagtccggc 38798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 15734959 - 15734807
Alignment:
Q  18 gatggaacgcatggtatcagagagaaaaagaa-------attttgtttttagtagggtagtacttagtagtattaccggcctatattatttttt---agg 107  Q
    |||||||||| |||||||| ||||||||||||       | |||||||||||| |||||||||||||||||| |||  |  |||| | ||||||   |||    
T  15734959 gatggaacgcgtggtatcaaagagaaaaagaataaaaaaaatttgtttttagtggggtagtacttagtagtactacttggttataattttttttttgagg 15734860  T
Q  108 cccataccttggtgaggcccagttccattgaactccttgcagaccccaaggtc 160  Q
    |||||||||||| |||| || |||||||| | ||||||||| | |||||||||    
T  15734859 cccataccttggggaggtccggttccattcagctccttgcacatcccaaggtc 15734807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 162
Target Start/End: Complemental strand, 27111854 - 27111747
Alignment:
Q  56 tttttagtagggtagtacttagtagtattaccggcctat-attattttttaggcccataccttggtgaggcccagttccattgaactccttgcagacccc 154  Q
    |||||| | |||||||||||||||||| ||| || |||| | | |||||||| ||||| |||||| ||||||| ||| |||||| ||||||||| ||| |    
T  27111854 tttttaatggggtagtacttagtagtactactgggctataacttttttttagacccatgccttggggaggcccggttgcattgagctccttgcacacctc 27111755  T
Q  155 aaggtccg 162  Q
    ||||||||    
T  27111754 aaggtccg 27111747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 170
Target Start/End: Original strand, 4168147 - 4168268
Alignment:
Q  51 ttttgtttttagtagggtagtacttagtagtattaccggcctata--ttattttttaggcccataccttggtgaggcccagttccattgaactccttgca 148  Q
    |||| |||||| | |||||||||||||||||| | | ||  ||||  || ||||||||||||||||||||  ||| |||  || ||||||||||||||||    
T  4168147 ttttttttttaatggggtagtacttagtagtactgctgggatataattttttttttaggcccataccttgaagagacccgatttcattgaactccttgca 4168246  T
Q  149 gaccccaaggtccggccttgct 170  Q
     |||| ||||| ||||||||||    
T  4168247 caccctaaggttcggccttgct 4168268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 162
Target Start/End: Original strand, 7944763 - 7944826
Alignment:
Q  99 ttttttaggcccataccttggtgaggcccagttccattgaactccttgcagaccccaaggtccg 162  Q
    ||||||||||||||||||||| || |||||||||||||||||   ||||| |||||||||||||    
T  7944763 ttttttaggcccataccttggggaagcccagttccattgaacggtttgcacaccccaaggtccg 7944826  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 165
Target Start/End: Original strand, 25562010 - 25562076
Alignment:
Q  99 ttttttaggcccataccttggtgaggcccagttccattgaactccttgcagaccccaaggtccggcc 165  Q
    |||||||||||||||| |||| ||||||   ||||||||| ||||||||| ||||||||||||||||    
T  25562010 ttttttaggcccatactttggggaggcctgattccattgagctccttgcacaccccaaggtccggcc 25562076  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 163
Target Start/End: Original strand, 34048992 - 34049103
Alignment:
Q  51 ttttgtttttagtagggtagtacttagtagtattaccggcctatattattttttaggcccataccttggtgaggcccagttccattgaactccttgcaga 150  Q
    |||||||||||||||||||||||||||||||  ||| || ||||| | ||||||| || |||||| | | ||| | ||||| |||| |  |||||||| |    
T  34048992 ttttgtttttagtagggtagtacttagtagttctactgggctataat-ttttttaagctcataccatagggagacacagtttcattaagttccttgcaca 34049090  T
Q  151 ccccaaggtccgg 163  Q
    |||||||||||||    
T  34049091 ccccaaggtccgg 34049103  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 170
Target Start/End: Original strand, 5973367 - 5973429
Alignment:
Q  108 cccataccttggtgaggcccagttccattgaactccttgcagaccccaaggtccggccttgct 170  Q
    |||||||||||| ||||||||| |||||||| |   ||||||||||||||||| |||| ||||    
T  5973367 cccataccttggggaggcccagctccattgagcggtttgcagaccccaaggtctggccctgct 5973429  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 165
Target Start/End: Original strand, 38009479 - 38009545
Alignment:
Q  99 ttttttaggcccataccttggtgaggcccagttccattgaactccttgcagaccccaaggtccggcc 165  Q
    |||||||||  |||||||||| ||||| ||| |||||||| ||| || || ||||||||||||||||    
T  38009479 ttttttaggttcataccttggggaggctcagctccattgagctctttacacaccccaaggtccggcc 38009545  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 8645961 - 8645917
Alignment:
Q  121 gaggcccagttccattgaactccttgcagaccccaaggtccggcc 165  Q
    ||||| |||||||||||| ||||||||| ||| ||||||||||||    
T  8645961 gaggctcagttccattgagctccttgcacaccacaaggtccggcc 8645917  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 162
Target Start/End: Original strand, 2477869 - 2477976
Alignment:
Q  56 tttttagtagggtagtacttagtagtattaccggcctat-attattttttaggcccataccttggtgaggcccagttccattgaactccttgcagacccc 154  Q
    |||||| | |||||||||||||||||| ||| || |||| | | |||||||| ||||| |||||| ||||||| ||| |||||| ||||||||| ||| |    
T  2477869 tttttaatggggtagtacttagtagtactactgggctataacttttttttagacccatgccttggggaggcccggttgcattgagctccttgcacacctc 2477968  T
Q  155 aaggtccg 162  Q
    ||||||||    
T  2477969 aaggtccg 2477976  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 162
Target Start/End: Complemental strand, 20611573 - 20611510
Alignment:
Q  99 ttttttaggcccataccttggtgaggcccagttccattgaactccttgcagaccccaaggtccg 162  Q
    |||||||| |||||||||| | ||||||||| |||||||| ||| ||||| |||||||||||||    
T  20611573 ttttttagacccataccttagggaggcccagctccattgagctctttgcacaccccaaggtccg 20611510  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 171
Target Start/End: Complemental strand, 4036896 - 4036783
Alignment:
Q  59 ttagtagggtagtacttagtagtattaccggcctatattatttttt-aggcccataccttggtgaggcccagttccattgaactccttgcagaccccaag 157  Q
    ||||| || ||||||||||||||| ||| || ||||| | |||||| |||| ||||| |||| ||||||||  |||||||| |   ||||| ||||||||    
T  4036896 ttagtgggatagtacttagtagtactactgggctataattttttttgaggctcatacattggggaggcccaactccattgagcgttttgcacaccccaag 4036797  T
Q  158 gtccggccttgctc 171  Q
    ||||| || |||||    
T  4036796 gtccgaccctgctc 4036783  T

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Target: scaffold0007 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 166
Target Start/End: Original strand, 232544 - 232611
Alignment:
Q  99 ttttttaggcccataccttggtgaggcccagttccattgaactccttgcagaccccaaggtccggcct 166  Q
    |||||||| | |||||||| | ||||||| |||||||||||||||||||| |  ||| ||||||||||    
T  232544 ttttttagactcataccttagggaggcccggttccattgaactccttgcacatgccagggtccggcct 232611  T

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Target: scaffold1590 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1590
Description:

Target: scaffold1590; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 432 - 501
Alignment:
Q  99 ttttttaggcccataccttggtgaggcccagttccattgaactccttgcagacccc-aaggtccggccttg 168  Q
    ||||| ||| |||||||||||  ||||| ||||| ||||||||||||||| ||||| ||||||||||||||    
T  432 tttttgaggtccataccttggcaaggcc-agttctattgaactccttgcacaccccaaaggtccggccttg 501  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 164
Target Start/End: Original strand, 23641460 - 23641525
Alignment:
Q  99 ttttttaggcccataccttggtgaggcccagttccattgaactccttgcagaccccaaggtccggc 164  Q
    ||||| ||||||||||||||| ||||||| |||||||||| |   ||||| ||||||| |||||||    
T  23641460 tttttgaggcccataccttggggaggcccggttccattgagcggtttgcacaccccaaagtccggc 23641525  T

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