View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2114_high_27 (Length: 239)
Name: NF2114_high_27
Description: NF2114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2114_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 37 - 237
Target Start/End: Original strand, 30173139 - 30173344
Alignment:
| Q |
37 |
caccatgtgacattaaataaaatactttattaattaactagtatagtattgagattaagacacacacat--------acatgtatgtgtatataaagagt |
128 |
Q |
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| T |
30173139 |
caccatgtgacattaaataaaatactttattaattaactagtatagtattgagattaagacacacacatacatacatacatgtatgtgtatataaagagt |
30173238 |
T |
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| Q |
129 |
gtgatagaggttagagtaattcacattcatttctttatcaaaaagaattcacattcatttcattattcatatactgatcatggggaaagagttatccact |
228 |
Q |
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| T |
30173239 |
gtgatagaggttagagtaattcacattcatttctttatcaaaaagaatttacattcatttcattattcatatac---tcatggggaaagagttatccgct |
30173335 |
T |
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| Q |
229 |
actccagcc |
237 |
Q |
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||||||||| |
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| T |
30173336 |
actccagcc |
30173344 |
T |
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