View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2114_low_1 (Length: 635)

Name: NF2114_low_1
Description: NF2114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2114_low_1
NF2114_low_1
[»] chr7 (1 HSPs)
chr7 (1-624)||(25788175-25788797)


Alignment Details
Target: chr7 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 1 - 624
Target Start/End: Original strand, 25788175 - 25788797
Alignment:
Q  1 atcatcataaaataacattacctggctatgctattc-tacaaaacatagacgataaccgcgtttcttaaaattttactttacaacataaagtgaatccaa 99  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25788175 atcatcataaaataacattacctggctatgctattcctacaaaacatagacgataacagcgtttcttaaaattttactttacaacataaagtgaatccaa 25788274  T
Q  100 actttagtttattggttttacacttgtggtcgtttgtttgccttaaaaatataaaggatttgacaatatactgtaattgttcatttagacttatcattca 199  Q
    ||||| |||||||||||||||||||||||||||||| || |||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25788275 acttttgtttattggttttacacttgtggtcgtttgattaccttaaa--tataaaggatttgacagtatactgtaattgttcatttagacttatcattca 25788372  T
Q  200 ataactttattggtacacttccctctttcagaatgagtaaagaacttcgatatttatcgctgttgcacaataatttgtg-ggatgcggcttgaccaatgg 298  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||| ||||||    
T  25788373 ataactttattgctacacttccctctttcagaatgagtaaagaacttcgatatttatcgctgttgcacaataatttgacaggatgcggcttgaacaatgg 25788472  T
Q  299 cacaatgcggcttgacatgattcagaggctgcagagtttaaatacattaggcctctcatacaacaatttgtcagttgatataactttcaatgaaaatcat 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25788473 cacaatgcggcttgacatgattcagaggctgcagagtttaaatacattaggcctctcatacaacaatttgtcagttgatataactttcaatgaaaatcat 25788572  T
Q  399 gatggcctttcatcctttccaaagatgaaatatctgttgttagcttcttgtaagttgagggaatttccaaagttcatgagaaatcaaccccatctaaaat 498  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||| ||||    
T  25788573 gatggcctttcatcctttccaaagatgaaatatctgttgttagcttcttgtaagttgatggagtttccaaagttcttgagaaatcaaccccatct-aaat 25788671  T
Q  499 ggcctagacttatccaacaactacattcatggagcaataccaatctggatattgagattcgactatctggtttatctgaatctttccaataatttcatct 598  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  25788672 ggcctagacttatccaacaactacattcatggagcaataccaaactggatattgagattcaactatctggtttatctgaatctttccaataatttcatca 25788771  T
Q  599 caaatttggaaagaccctttgatgat 624  Q
    || |||||||||||||||||||||||    
T  25788772 cagatttggaaagaccctttgatgat 25788797  T

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