View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2114_low_10 (Length: 404)
Name: NF2114_low_10
Description: NF2114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2114_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 8 - 222
Target Start/End: Complemental strand, 43761144 - 43760930
Alignment:
| Q |
8 |
cagcacagacctaatagagaatagcattaattgatttgaagttactttcacacctctctctactttatatatattttttcattttaaattacatgcaccc |
107 |
Q |
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| T |
43761144 |
cagcacaaacctaatagagaatagcattaattgatttgaagttactttcacacctctctctactttatatatattttttcattttaaattacatgcaccc |
43761045 |
T |
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| Q |
108 |
ttttcataaagaaagcaaataaaattaaacacaaaaaatctcacaggaaaggggtatcttgctttctttgttctgaagcctttgtcactttcttgcatat |
207 |
Q |
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| T |
43761044 |
ttttcataaagaaagcaaataaaattaaacacaaaaaatctcacaggaaaggggtatcttgctttctttgttctgaagcctttgtcactttcttgcatat |
43760945 |
T |
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| Q |
208 |
taagtttggggtcac |
222 |
Q |
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| T |
43760944 |
taagtttggggtcac |
43760930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 318 - 386
Target Start/End: Complemental strand, 43760834 - 43760766
Alignment:
| Q |
318 |
tactagttatacttgtggcttatagttcatagaacttttaagtaataaaatgaaaagcaaggttataat |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43760834 |
tactagttatacttgtggcttatagttcatagaacttttaagtaataaaatgaaaagcaaggttataat |
43760766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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