View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2114_low_11 (Length: 392)
Name: NF2114_low_11
Description: NF2114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2114_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 16 - 382
Target Start/End: Original strand, 24489047 - 24489398
Alignment:
| Q |
16 |
aatattgtggaatcaatggctgtcttcctcgctgctggctgccccatactcgaaacgttggatacttacttcaagaggttgaaattaaccaaagttcccg |
115 |
Q |
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| T |
24489047 |
aatattgtggattcaatggttgtcttcctcgctg---gctgccccatactcgaaacgttggatacttacgtcaagaggttgaaattaaccaaagttcctg |
24489143 |
T |
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| Q |
116 |
tgccatcttcctccaagaggttgaacttgaaattaaccagctgggatttctcttggacttgtcttaaaataaattatgacgagcacgatgtaaagttata |
215 |
Q |
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| T |
24489144 |
tgccatcttccttcaagaggttgaacttgaaattaaccagcggggatttctcttggacttgtcttcaaataaattatgacgagcacgatgtaaagttata |
24489243 |
T |
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| Q |
216 |
tagaacttacatgggcatcattggcaacttgcaaactgtggaggaagcatatcttgatgtcttttccccatgcgaaagtaaatttgtcgaccgtgtactc |
315 |
Q |
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| T |
24489244 |
tagaacttacatcggcatcattggcaacttgcaaactgtggaggaagcatatcttgatgt-------------gaaagtaaatttgtcgaccgtgtactc |
24489330 |
T |
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| Q |
316 |
aagaaactccgagaacgaagttatgg-tttcatctacttttgcatcactcgaaatcaaaggtgaagtt |
382 |
Q |
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| T |
24489331 |
aagaaactccgagaacgaagttatggttttcatctacttttgcatcactcgaaatcaaaggtgaagtt |
24489398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 227 - 283
Target Start/End: Complemental strand, 25031505 - 25031449
Alignment:
| Q |
227 |
tgggcatcattggcaacttgcaaactgtggaggaagcatatcttgatgtcttttccc |
283 |
Q |
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| T |
25031505 |
tgggcatcattggaaacttgcagagtgtggaggaagcatattttgatgtcttttccc |
25031449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 307
Target Start/End: Original strand, 30078250 - 30078333
Alignment:
| Q |
224 |
acatgggcatcattggcaacttgcaaactgtggaggaagcatatcttgatgtcttttccccatgcgaaagtaaatttgtcgacc |
307 |
Q |
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| T |
30078250 |
acatgggcatcgttggcaactttcatagtatggtggaagcatttctcgatgtcttttcctcacgtgaaagtgaatttgtcgacc |
30078333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 307
Target Start/End: Original strand, 20506792 - 20506870
Alignment:
| Q |
229 |
ggcatcattggcaacttgcaaactgtggaggaagcatatcttgatgtcttttccccatgcgaaagtaaatttgtcgacc |
307 |
Q |
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| T |
20506792 |
ggcatcattggcaacttgcagagcatggaggaagcatatcttgattttttttccttgtgtgaaagtgaatttatcgacc |
20506870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 227 - 307
Target Start/End: Original strand, 17772518 - 17772598
Alignment:
| Q |
227 |
tgggcatcattggcaacttgcaaactgtggaggaagcatatcttgatgtcttttccccatgcgaaagtaaatttgtcgacc |
307 |
Q |
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| T |
17772518 |
tgggcatcattggcaacttgcagagtatggaggaagcatatcttgatgtcttttccctgcgtgaaagtgaatttgtcgacc |
17772598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 17772376 - 17772413
Alignment:
| Q |
103 |
accaaagttcccgtgccatcttcctccaagaggttgaa |
140 |
Q |
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| T |
17772376 |
accaaagttcccgtgccaccttcctccaagaggttgaa |
17772413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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