View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2114_low_13 (Length: 343)
Name: NF2114_low_13
Description: NF2114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2114_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 22 - 323
Target Start/End: Original strand, 8028214 - 8028520
Alignment:
| Q |
22 |
gccataccttggatgatctagaaaataaactatagctcaattttttaatatcgtgtttgttctaattttctgtgtgccttaaaagtgagtgcagaaactg |
121 |
Q |
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| T |
8028214 |
gccataccttggatgatctagaaaataaactatagctcaattttttaatatcgtgtttgttctaattttctgtgtgccttaaaagtgagtgcagaaactg |
8028313 |
T |
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| Q |
122 |
tcatggcaaattaaattatggttctcgaccgattgaattttgacctatgatgagtacggatatcggtacgtaa-------tacgttaaatttnnnnnnnn |
214 |
Q |
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| T |
8028314 |
tcatggaaaattaaattatggttctcgaccaattgaattatgacctatgatgagtacgggtaccgatacgtaatacggtgtacgttaaattt-aaaaaaa |
8028412 |
T |
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| Q |
215 |
ntgaaggtatggatacgtgggtataatacataaaaaagaataaaaatttctagcaaattactaccaatggttttgtaaaaaacatgcttagagaattaat |
314 |
Q |
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| T |
8028413 |
atgaaggtacggatacgtgggtataatacataaaaaagaataaaaatttctagtgaattactaccaatggttttgt-aaaaacatgcttagagaaataat |
8028511 |
T |
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| Q |
315 |
caattataa |
323 |
Q |
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| T |
8028512 |
caattataa |
8028520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 69 - 160
Target Start/End: Original strand, 8018883 - 8018974
Alignment:
| Q |
69 |
atatcgtgtttgttctaattttctgtgtgccttaaaagtgagtgcagaaactgtcatggcaaattaaattatggttctcgaccgattgaatt |
160 |
Q |
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|||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| || | |||||||| |
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| T |
8018883 |
atatagtgtttgttctaatttgttgtgtgccttgaaagtgagtgcagaaactgtcatggcaaattaaattatggttcttgatcaattgaatt |
8018974 |
T |
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