View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2114_low_16 (Length: 328)

Name: NF2114_low_16
Description: NF2114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2114_low_16
NF2114_low_16
[»] chr8 (9 HSPs)
chr8 (63-313)||(24489415-24489656)
chr8 (51-307)||(20506975-20507223)
chr8 (66-309)||(24525313-24525548)
chr8 (157-307)||(25895816-25895966)
chr8 (158-272)||(25031112-25031226)
chr8 (130-307)||(30078507-30078684)
chr8 (161-306)||(26034416-26034561)
chr8 (52-299)||(25923701-25923940)
chr8 (171-309)||(24942490-24942628)
[»] chr4 (2 HSPs)
chr4 (152-296)||(17772788-17772932)
chr4 (28-77)||(17772675-17772725)
[»] chr2 (1 HSPs)
chr2 (239-309)||(36162524-36162594)
[»] chr3 (1 HSPs)
chr3 (159-276)||(45793561-45793678)


Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 63 - 313
Target Start/End: Original strand, 24489415 - 24489656
Alignment:
Q  63 tttgtactattattgcaccatcactttttgttatcatgtacaagcagtggccacttccttcatgcccgcccctgttataaataattcaaaattccgcaat 162  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||| |||| |        |||||||||||||||||||||||||||||||||    
T  24489415 tttgtactattattgcaccatcactgtt-gttatcatgtacaagcagtggccgcttcat--------gcccctgttataaataattcaaaattccgcaat 24489505  T
Q  163 ttacatcatctaaagttcattctcccttgcttcaattcaaatcttctgctcaaagtgcttcagaaatgccatctgtttcaagttctcataattcagagta 262  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24489506 ttacatcatctaaagttcattctccctttcttcaactcaaatcttctgctcaaagtgcttcagaaatgccatctgcttcaagttctcataattcagagta 24489605  T
Q  263 gcaaggtttgttgagttctcaagttcaattaaatcaatttttggtctatct 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24489606 gcaaggtttgttgagttctcaagttcaattaaatcaatttttggtctatct 24489656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 51 - 307
Target Start/End: Original strand, 20506975 - 20507223
Alignment:
Q  51 tatatatgtagttttgtactattattgcaccatcactttttgttatcatgtacaagcagtggccacttccttcatgcccgcccctgttataaataattca 150  Q
    ||||||||||||||||||||| |||||  ||||||||| ||||||||||||||||||||  ||| ||||        | |||||  || ||||| || ||    
T  20506975 tatatatgtagttttgtactaatattgggccatcacttgttgttatcatgtacaagcagaagccgcttcg-------cagcccca-ttctaaattatcca 20507066  T
Q  151 aaattccgcaatttacatcatctaaagttcattctcccttgcttcaattcaaatcttctgctcaaagtgcttcagaaatgccatctgtttcaagttctca 250  Q
     ||||  ||||||| || ||||||||||||||| | || ||||||||  | |||||||||||||| |||||| ||||||||||| || || |||||||||    
T  20507067 gaattttgcaatttgcaccatctaaagttcattattccctgcttcaacacgaatcttctgctcaacgtgcttgagaaatgccatatgcttaaagttctca 20507166  T
Q  251 taattcagagtagcaaggtttgttgagttctcaagttcaattaaatcaatttttggt 307  Q
    ||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||    
T  20507167 taattcagagtagcaaggtttgtagagttctcaggttaaattaaatcaatttttggt 20507223  T

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Target: chr8; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 66 - 309
Target Start/End: Original strand, 24525313 - 24525548
Alignment:
Q  66 gtactattattgcaccatcactttttgttatcatgtacaagcagtggccacttccttcatgcccgcccctgttataaataattcaaaattccgcaattta 165  Q
    |||||| |||||  ||||||||| |||||||||||||||| ||||||||||||| |||        || |||| ||||  || || | || ||||| |||    
T  24525313 gtactaatattgtgccatcacttgttgttatcatgtacaaccagtggccacttcattc--------ccatgttctaaactatccagagtttcgcaaatta 24525404  T
Q  166 catcatctaaagttcattctcccttgcttcaattcaaatcttctgctcaaagtgcttcagaaatgccatctgtttcaagttctcataattcagagtagca 265  Q
     ||| ||||||||||||||| || ||||| || ||||||||||||||||| |||||| ||||||||||| || || ||||||||||||| || || ||||    
T  24525405 gatcgtctaaagttcattcttccctgctttaactcaaatcttctgctcaacgtgcttgagaaatgccatatgcttaaagttctcataatccaaagcagca 24525504  T
Q  266 aggtttgttgagttctcaagttcaattaaatcaatttttggtct 309  Q
    ||||||||||| |||| ||||| |||| ||||||| ||||||||    
T  24525505 aggtttgttgacttcttaagtttaatttaatcaatctttggtct 24525548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 157 - 307
Target Start/End: Complemental strand, 25895966 - 25895816
Alignment:
Q  157 cgcaatttacatcatctaaagttcattctcccttgcttcaattcaaatcttctgctcaaagtgcttcagaaatgccatctgtttcaagttctcataattc 256  Q
    |||||||||| |||||||||||||||||| || || ||||| || ||| |  || |||| |||||| ||||||||||  || ||||||||||||||||||    
T  25895966 cgcaatttacttcatctaaagttcattcttccctgtttcaactcgaatgtcttggtcaacgtgcttgagaaatgccagatgcttcaagttctcataattc 25895867  T
Q  257 agagtagcaaggtttgttgagttctcaagttcaattaaatcaatttttggt 307  Q
    | || |  ||||||||||||||||||||||| |||||||||||||||||||    
T  25895866 aaagcaagaaggtttgttgagttctcaagtttaattaaatcaatttttggt 25895816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 158 - 272
Target Start/End: Complemental strand, 25031226 - 25031112
Alignment:
Q  158 gcaatttacatcatctaaagttcattctcccttgcttcaattcaaatcttctgctcaaagtgcttcagaaatgccatctgtttcaagttctcataattca 257  Q
    |||||||||||||||||||||||||||| || ||||||||    | |||||||||||| |||||| ||||||||||| || ||||||||||| |||||||    
T  25031226 gcaatttacatcatctaaagttcattcttccctgcttcaacatgagtcttctgctcaacgtgcttgagaaatgccatatgcttcaagttctcttaattca 25031127  T
Q  258 gagtagcaaggtttg 272  Q
    |||||||||||||||    
T  25031126 gagtagcaaggtttg 25031112  T

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Target: chr8; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 130 - 307
Target Start/End: Original strand, 30078507 - 30078684
Alignment:
Q  130 gcccctgttataaataattcaaaattccgcaatttacatcatctaaagttcattctcccttgcttcaattcaaatcttctgctcaaagtgcttcagaaat 229  Q
    ||||||||| ||||| || || |||| |||||||||  |||||||||||||||||| || |||||||| || ||||||||| || | |  ||| | ||||    
T  30078507 gcccctgttctaaattatccagaatttcgcaatttatttcatctaaagttcattcttccctgcttcaactcgaatcttctggtcgacgctcttgaaaaat 30078606  T
Q  230 gccatctgtttcaagttctcataattcagagtagcaaggtttgttgagttctcaagttcaattaaatcaatttttggt 307  Q
    ||||  || ||| ||||||||||||| |||| ||||||||| ||||| |||||||||| |||| ||||||| ||||||    
T  30078607 gccacgtgcttcgagttctcataattaagagcagcaaggttcgttgacttctcaagtttaatttaatcaatctttggt 30078684  T

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Target: chr8; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 161 - 306
Target Start/End: Original strand, 26034416 - 26034561
Alignment:
Q  161 atttacatcatctaaagttcattctcccttgcttcaattcaaatcttctgctcaaagtgcttcagaaatgccatctgtttcaagttctcataattcagag 260  Q
    ||||||||||||| ||||||||||| || || ||||| |||||||||||| || | |||||| |||||||||   || ||||||||||||||||||||||    
T  26034416 atttacatcatctgaagttcattcttccatgtttcaactcaaatcttctggtccacgtgcttgagaaatgccgcatgcttcaagttctcataattcagag 26034515  T
Q  261 tagcaaggtttgttgagttctcaagttcaattaaatcaatttttgg 306  Q
     | |||||| |||| | |||| ||||| |||| || |||| |||||    
T  26034516 caacaaggtatgttaatttcttaagtttaattcaaacaatctttgg 26034561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 52 - 299
Target Start/End: Original strand, 25923701 - 25923940
Alignment:
Q  52 atatatgtagttttgtactattattgcaccatcactttttgttatcatgtacaagcagtggccacttccttcatgcccgcccctgttataaataattcaa 151  Q
    ||||||| |||||||||||  |||||  |||| |||| || |||||||||||||||||||| |||||| |        ||||||||| || || || ||     
T  25923701 atatatgcagttttgtactgatattgttccattacttgtttttatcatgtacaagcagtggacacttcat--------gcccctgttctagattatccag 25923792  T
Q  152 aattccgcaatttacatcatctaaagttcattctcccttgcttcaattcaaatcttctgctcaaagtgcttcagaaatgccatctgtttcaagttctcat 251  Q
    |||| ||| | ||| ||||| ||||||||||||||||||||||||| || ||||||||  |||  ||||| || |||||  || || || || |||||||    
T  25923793 aatttcgccaattaaatcatataaagttcattctcccttgcttcaactcgaatcttcttgtcactgtgctccataaatgtgatatgcttaaatttctcat 25923892  T
Q  252 aattcagagtagcaaggtttgttgagttctcaagttcaattaaatcaa 299  Q
    |||||||||   ||||||||||||| || |||| || |||| ||||||    
T  25923893 aattcagagcgacaaggtttgttgacttttcaactttaattgaatcaa 25923940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 171 - 309
Target Start/End: Original strand, 24942490 - 24942628
Alignment:
Q  171 tctaaagttcattctcccttgcttcaattcaaatcttctgctcaaagtgcttcagaaatgccatctgtttcaagttctcataattcagagtagcaaggtt 270  Q
    ||||||||| ||||| || ||||| || || |||||| |||| ||  ||||| ||||||||||| || |||||||||| ||||||||||| |  ||||||    
T  24942490 tctaaagttgattctaccctgctttaactcgaatcttttgctaaacatgcttgagaaatgccatatgcttcaagttcttataattcagagcaataaggtt 24942589  T
Q  271 tgttgagttctcaagttcaattaaatcaatttttggtct 309  Q
    |||  |||| |  |||| |||| ||||||| ||||||||    
T  24942590 tgtctagtttttgagtttaattgaatcaatctttggtct 24942628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 152 - 296
Target Start/End: Original strand, 17772788 - 17772932
Alignment:
Q  152 aattccgcaatttacatcatctaaagttcattctcccttgcttcaattcaaatcttctgctcaaagtgcttcagaaatgccatctgtttcaagttctcat 251  Q
    |||| ||||||||| ||||||||||||||||||| || |||||||| || |||||||||||    |||||| ||||||||||  || ||||||||||| |    
T  17772788 aatttcgcaatttaaatcatctaaagttcattcttccctgcttcaactcgaatcttctgctgggcgtgcttgagaaatgccacatgcttcaagttctcct 17772887  T
Q  252 aattcagagtagcaaggtttgttgagttctcaagttcaattaaat 296  Q
    |||||||||| |||||||||||||||||||| |||||||| ||||    
T  17772888 aattcagagttgcaaggtttgttgagttctcgagttcaatcaaat 17772932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 17772675 - 17772725
Alignment:
Q  28 ttattagtatggtttatatctatt-atatatgtagttttgtactattattg 77  Q
    |||||| |||||||||||| |||| |||||||||||||||||||| |||||    
T  17772675 ttattattatggtttatatgtatttatatatgtagttttgtactaatattg 17772725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 239 - 309
Target Start/End: Original strand, 36162524 - 36162594
Alignment:
Q  239 ttcaagttctcataattcagagtagcaaggtttgttgagttctcaagttcaattaaatcaatttttggtct 309  Q
    |||||||||||||||||||||| | ||||||||||| | |||||||||| |||| || |||| ||||||||    
T  36162524 ttcaagttctcataattcagagcaacaaggtttgtttacttctcaagtttaattcaaacaatctttggtct 36162594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 276
Target Start/End: Original strand, 45793561 - 45793678
Alignment:
Q  159 caatttacatcatctaaagttcattctcccttgcttcaattcaaatcttctgctcaaagtgcttcagaaatgccatctgtttcaagttctcataattcag 258  Q
    ||||||||||||||||||||||||| | || || || || ||||||||| || || | ||| || ||||||| ||  || |||| |||||||||||||||    
T  45793561 caatttacatcatctaaagttcatttttccatgttttaactcaaatcttttggtccatgtgattgagaaatgacacatgattcaggttctcataattcag 45793660  T
Q  259 agtagcaaggtttgttga 276  Q
    || | |||| ||||||||    
T  45793661 agcaacaagttttgttga 45793678  T

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