View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2114_low_18 (Length: 301)
Name: NF2114_low_18
Description: NF2114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2114_low_18 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 45 - 301
Target Start/End: Original strand, 53663478 - 53663734
Alignment:
| Q |
45 |
aataaaataggttacaagaagaagaagagaaagtaaatatattattcacacaatcatacctcatcatgctaccctgaatatcagaatcttgaggactcgc |
144 |
Q |
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| T |
53663478 |
aataaaataggttacaagaaggagaagagcaagtaaatatattattcacgcaatcatacctcatcatgttgccctgaatatcagaatcttgaggactcac |
53663577 |
T |
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| Q |
145 |
tttattttgtgaatttgaatgaagggatttacaagtcaccccagaagcagagcgaacctgcataaaatatttattgccaagatctagcaaatcaatttgc |
244 |
Q |
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| T |
53663578 |
tttattttgtgaatttgaatgaagggatttacaagtcaccccagaagcagagcaaacctgcataaaatatttattgccaagatctagcaaatcaatttgc |
53663677 |
T |
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| Q |
245 |
taatgcaagtaggtaccagcaaagtttccatagcctgataaaacgaagaaattaatt |
301 |
Q |
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| T |
53663678 |
taatgcaggtaggtaccagcaaagtttccatagcctgataaaacgaagaaattaatt |
53663734 |
T |
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