View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2114_low_21 (Length: 260)
Name: NF2114_low_21
Description: NF2114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2114_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 82 - 249
Target Start/End: Original strand, 2078287 - 2078454
Alignment:
| Q |
82 |
atgattctgagtctgaatttgaatcctctgcaatgcaattgcatctcattcatcaccagaagattcctatccagtgtggtccccacacattccccttcag |
181 |
Q |
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| T |
2078287 |
atgattctgagtctgaatttgaatcctctccaatgcaattgcatctcattcatcaccagaagattcctatccagtgtggtccccacacattccccttcag |
2078386 |
T |
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| Q |
182 |
accatataaaaaccttagtttcaaagggtctttatcaccaaacacttcaatttttcacacaacttcat |
249 |
Q |
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| T |
2078387 |
accatataaaaaccttagtttcaatgggtctttatcaccaaacacttcaatttttcacacaacttcat |
2078454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 2078223 - 2078257
Alignment:
| Q |
18 |
cttatttataagtattaaatttcttctcaaaaaac |
52 |
Q |
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| T |
2078223 |
cttatttataagtattaaatttcttctcaaaaaac |
2078257 |
T |
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