View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2114_low_22 (Length: 259)
Name: NF2114_low_22
Description: NF2114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2114_low_22 |
 | |
|
| [»] scaffold0268 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0268 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: scaffold0268
Description:
Target: scaffold0268; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 22418 - 22658
Alignment:
| Q |
19 |
aacccagaccgattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagttgatc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22418 |
aacccagaccgattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagttgatc |
22517 |
T |
|
| Q |
119 |
tttcctccgatctcaagaactggaacaacctcactgacggtgaacgccacttcgtctctcacgttctcgccttcttcgccgcctcagacggaattgtcct |
218 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
22518 |
tttcctccgatctcaagcactggaacaacctcacagacggcgaacgccacttcatctctcacgttcttgccttcttcgccgcctcagacggaattgtcct |
22617 |
T |
|
| Q |
219 |
tgaaaatcttgccggaaggttcatgaaagaagttcaaatct |
259 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
22618 |
tgaaaatcttgccggaagattcatgaaagaagtccaaatct |
22658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 10197670 - 10197430
Alignment:
| Q |
19 |
aacccagaccgattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagttgatc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10197670 |
aacccagaccgattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagttgatc |
10197571 |
T |
|
| Q |
119 |
tttcctccgatctcaagaactggaacaacctcactgacggtgaacgccacttcgtctctcacgttctcgccttcttcgccgcctcagacggaattgtcct |
218 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10197570 |
tttcctccgatctcaagcactggaacaacctcacagacggcgaacgccacttcatctctcacgttcttgccttcttcgccgcctcagacggaattgtcct |
10197471 |
T |
|
| Q |
219 |
tgaaaatcttgccggaaggttcatgaaagaagttcaaatct |
259 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
10197470 |
tgaaaatcttgccggaagattcatgaaagaagtccaaatct |
10197430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 25026162 - 25025922
Alignment:
| Q |
19 |
aacccagaccgattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagttgatc |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
25026162 |
aacccagaccgattctgtatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctctttctggaccgccgaagaagtcgatc |
25026063 |
T |
|
| Q |
119 |
tttcctccgatctcaagaactggaacaacctcactgacggtgaacgccacttcgtctctcacgttctcgccttcttcgccgcctcagacggaattgtcct |
218 |
Q |
| |
|
||||||||||||| | |||||||||||||||| ||||| |||||||||||| |||||||| | |||||||||||||||||||| ||||| || ||||| |
|
|
| T |
25026062 |
tttcctccgatcttcaacactggaacaacctcaccgacggcgaacgccacttcatctctcacatcctcgccttcttcgccgcctccgacggtatcgtcct |
25025963 |
T |
|
| Q |
219 |
tgaaaatcttgccggaaggttcatgaaagaagttcaaatct |
259 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
25025962 |
cgaaaatctcgccggaagattcatgaaagaagttcaaatct |
25025922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 19456929 - 19457159
Alignment:
| Q |
19 |
aacccagaccgattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagttgatc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
19456929 |
aacccagaccgattctgcatgttcccaatccaatacccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgctgaagaagtcgatc |
19457028 |
T |
|
| Q |
119 |
tttcctccgatctcaagaactggaacaacctcactgacggtgaacgccacttcgtctctcacgttctcgccttcttcgccgcctcagacggaattgtcct |
218 |
Q |
| |
|
||||||||||||||||| ||||| | |||||||| ||||| |||||||||||| ||||||| || |||||||||||||| ||||| ||||| || ||||| |
|
|
| T |
19457029 |
tttcctccgatctcaagcactggcaaaacctcaccgacggcgaacgccacttcatctctcatgtcctcgccttcttcgctgcctccgacggcatcgtcct |
19457128 |
T |
|
| Q |
219 |
tgaaaatcttgccggaaggttcatgaaagaa |
249 |
Q |
| |
|
||||||||| ||||| || || ||||||||| |
|
|
| T |
19457129 |
tgaaaatctcgccggtagatttatgaaagaa |
19457159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University