View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2114_low_23 (Length: 258)
Name: NF2114_low_23
Description: NF2114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2114_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 7131011 - 7130911
Alignment:
| Q |
1 |
ccaaaatattttcaacccaagatcttagagggggcttttggatagccacaagaaaacactaatgatatatgggacaagatgacacatgggattacaaaag |
100 |
Q |
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| T |
7131011 |
ccaaaatattttcaacccaagatcttagagggggcttttggatagccacaagaaaacactaatgttatatgggacaagatgacacatgggattacaaaag |
7130912 |
T |
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| Q |
101 |
t |
101 |
Q |
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| T |
7130911 |
t |
7130911 |
T |
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Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 103 - 211
Target Start/End: Original strand, 17083889 - 17083998
Alignment:
| Q |
103 |
gtggcgtttaatttggactcaccgaaaaattggtccaacttgaacccattaactt-aaaccattgatcaaataagatgtatagattttatgacagtcctt |
201 |
Q |
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| T |
17083889 |
gtggcgtttaatttggacccattgaaaaattggtccaacttggacccattaacttaaaaccattgatcaaataagatgtacatattttacggtagtccat |
17083988 |
T |
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| Q |
202 |
ccacacatga |
211 |
Q |
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| T |
17083989 |
ccacacatga |
17083998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 108 - 192
Target Start/End: Original strand, 38701069 - 38701152
Alignment:
| Q |
108 |
gtttaatttggactcaccgaaaaattggtccaacttgaacccattaacttaaaccattgatcaaataagatgtatagattttatg |
192 |
Q |
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| T |
38701069 |
gtttaatttggac-cattgaaaaattggtctaacttgaaccaattaacttaaaccattgatcaaataggatgtatagattttatg |
38701152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 108 - 240
Target Start/End: Original strand, 54385236 - 54385367
Alignment:
| Q |
108 |
gtttaatttggactcaccgaaaaattggtccaacttgaacccattaacttaaaccattgatcaaataagatgtatagattttatgacagtccttccacac |
207 |
Q |
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| T |
54385236 |
gtttaatttggacccattgaaaaattgatccaacttggaccaattaacttagaccattgatcaaataagatgtatagattttatagtagtccatctgcac |
54385335 |
T |
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| Q |
208 |
atgattaaactctctcactcttccagcatctct |
240 |
Q |
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| T |
54385336 |
atgagt-tgctctctcactcttccagtatctct |
54385367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 9257321 - 9257408
Alignment:
| Q |
13 |
caacccaagatcttagagggggcttttggatagccacaagaaaacactaatgatatatgggacaagatgacacatgggattacaaaagt |
101 |
Q |
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| T |
9257321 |
caacacaagatcttataggggg-ttttagataaccacatggaagcactaatgatatgtgggacaagatggcacatgagattaaaaaagt |
9257408 |
T |
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