View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2114_low_24 (Length: 250)
Name: NF2114_low_24
Description: NF2114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2114_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 8473725 - 8473575
Alignment:
| Q |
1 |
cttggtaaataaattcaaaaaaccaattttcgaccattatctcgaggtcggattcaattgaaacccatctctaacactttttattattgttaatctcggt |
100 |
Q |
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| T |
8473725 |
cttggtaaaaaaattcaaaaaaccaattttcgaccattatctcgaggtcggattcaattgaaacccatctctaacactttttatttttgttaatctcggt |
8473626 |
T |
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| Q |
101 |
atttactttctagtcattatttacatcaacaaacaattcaaattatattca |
151 |
Q |
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| T |
8473625 |
ttttactttctagtcattatttacatcaacaaacaattcaaattttattca |
8473575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 148 - 240
Target Start/End: Complemental strand, 8473514 - 8473422
Alignment:
| Q |
148 |
ttcaccatttattatttgcatggttcaatatacttgttgaattgttagcacttcttttaaagaccaacatccatatcaacttctatatattct |
240 |
Q |
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| T |
8473514 |
ttcaccatttattatttgcatggttcaatatacttgttgaattgttagcacttcttttaaaggccaacatccatatcaacttctatatattct |
8473422 |
T |
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