View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2114_low_25 (Length: 248)
Name: NF2114_low_25
Description: NF2114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2114_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 10 - 229
Target Start/End: Complemental strand, 52164126 - 52163907
Alignment:
| Q |
10 |
gattatactgcaaagattgaggattggatggagttgcagaagaggatgaggatctatgaattgggttcgttgccgccgtttttgcttgtttttgccggga |
109 |
Q |
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| T |
52164126 |
gattatactgcaaagattgaggattggatggagttgcagaagaggatgaggatctatgaattgggttcgttgccgccgtttttgcttgtttttgccggga |
52164027 |
T |
|
| Q |
110 |
atattgctccggtggatcataggtggaatcaacatggacttggtggtgataattttcgtggtctttgtagaaatcttcatcccggtcctgtgagtttgtt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52164026 |
atattgctccggtggatcataggtggaatcaacatggacttggtggtgataattttcgtggtctttgtagaaatcttcatcccggtcctgtgagtttgtt |
52163927 |
T |
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| Q |
210 |
gcattggagtgggaaaggta |
229 |
Q |
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|||||||||||||||||||| |
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| T |
52163926 |
gcattggagtgggaaaggta |
52163907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 6635221 - 6635012
Alignment:
| Q |
20 |
caaagattgaggattggatggagttgcagaagaggatgaggatctatgaattgggttcgttgccgccgtttttgcttgtttttgccgggaatattgctcc |
119 |
Q |
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||||||||||||| |||||||| || || ||||||||||| ||||||||| | ||||| ||||| || ||||||||||||||||| ||| | |||| ||| |
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| T |
6635221 |
caaagattgaggaatggatggaattacaaaagaggatgagaatctatgaacttggttcattgccaccttttttgcttgtttttgcaggggaaattgttcc |
6635122 |
T |
|
| Q |
120 |
ggtggatcataggtggaatcaacatggacttggtggtgataattttcgtggtctttgtagaaatcttcatcccggtcctgtgagtttgttgcattggagt |
219 |
Q |
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||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||| ||||| |||||||| |||||||||||| |
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| T |
6635121 |
agtggatcatagatggaatcaacatggtcttggtggtgataattttcgaggtctttgtagagatcttcatcctggtccagtgagtttattgcattggagt |
6635022 |
T |
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| Q |
220 |
gggaaaggta |
229 |
Q |
| |
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|| ||||||| |
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| T |
6635021 |
ggaaaaggta |
6635012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 162
Target Start/End: Original strand, 40207480 - 40207521
Alignment:
| Q |
121 |
gtggatcataggtggaatcaacatggacttggtggtgataat |
162 |
Q |
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| T |
40207480 |
gtggatcataggtggaatcaacacggacttggaggtgataat |
40207521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 34 - 227
Target Start/End: Original strand, 33346586 - 33346779
Alignment:
| Q |
34 |
tggatggagttgcagaagaggatgaggatctatgaattgggttcgttgccgccgtttttgcttgtttttgccgggaatattgctccggtggatcataggt |
133 |
Q |
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|||||||||||||||||||| ||||| |||||||| | ||||||||||||||||||||| | ||||||||||||| ||| | ||||||||||| ||| |
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| T |
33346586 |
tggatggagttgcagaagagaatgagaatctatgagcttggttcgttgccgccgtttttgttggtttttgccgggaggattacgccggtggatcaccggt |
33346685 |
T |
|
| Q |
134 |
ggaatcaacatggacttggtggtgataattttcgtggtctttgtagaaatcttcatcccggtcctgtgagtttgttgcattggagtgggaaagg |
227 |
Q |
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||||||| ||||| || || ||||||||||||||||| |||||| | || | ||||| || || ||||||||||||||||||||||| ||||| |
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| T |
33346686 |
ggaatcagcatgggctcggcggtgataattttcgtgggctttgtcgggatttgcatccaggcccggtgagtttgttgcattggagtggaaaagg |
33346779 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 34 - 229
Target Start/End: Complemental strand, 7266511 - 7266316
Alignment:
| Q |
34 |
tggatggagttgcagaagaggatgaggatctatgaattgggttcgttgccgccgtttttgcttgtttttgccgggaatattgctccggtggatcataggt |
133 |
Q |
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||||||||| | |||||||| |||||||||||||| | ||||| |||||||||||| |||||||||| || || || || | |||||| |||||| ||| |
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| T |
7266511 |
tggatggagcttcagaagagaatgaggatctatgagcttggttcattgccgccgtttctgcttgttttcgcaggtaaaatagttccggttgatcatcggt |
7266412 |
T |
|
| Q |
134 |
ggaatcaacatggacttggtggtgataattttcgtggtctttgtagaaatcttcatcccggtcctgtgagtttgttgcattggagtgggaaaggta |
229 |
Q |
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||||||||||||| ||||| ||||||||||| | ||| |||||| | || | ||||| || || |||||||| | |||||||||||||| |||| |
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| T |
7266411 |
ggaatcaacatgggcttggcggtgataatttccatgggctttgtcgggatttgcatccgggcccggtgagtttacttcattggagtgggaagggta |
7266316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 227
Target Start/End: Complemental strand, 15964453 - 15964247
Alignment:
| Q |
21 |
aaagattgaggattggatggagttgcagaagaggatgaggatctatgaattgggttcgttgccgccgtttttgcttgtttttgccgggaatattgctccg |
120 |
Q |
| |
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||||||||| | ||||||||||| || |||| || || |||||||| | ||||| ||||| || ||||| ||||||||||| || ||| ||| | |
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| T |
15964453 |
aaagattgaaaactggatggagttacaaaagaagagaagaatctatgagctaggttcattgccaccttttttacttgtttttgcaggaaatgttgaagct |
15964354 |
T |
|
| Q |
121 |
gtggatcataggtggaatcaacatggacttggtggtgataattttcgtggtctttgtagaaatcttcatcccggtcctgtgagtttgttgcattggagtg |
220 |
Q |
| |
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| |||||||| |||||||||||||||||||||||||||||||| |||| |||||||| | | ||||| |||||||| ||||| ||||||||||||| |
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| T |
15964353 |
attgatcatagatggaatcaacatggacttggtggtgataatttgaatggtgtttgtagatctttgcatcctggtcctgttagtttattgcattggagtg |
15964254 |
T |
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| Q |
221 |
ggaaagg |
227 |
Q |
| |
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| ||||| |
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| T |
15964253 |
gaaaagg |
15964247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 227
Target Start/End: Complemental strand, 2498608 - 2498508
Alignment:
| Q |
127 |
cataggtggaatcaacatggacttggtggtgataattttcgtggtctttgtagaaatcttcatcccggtcctgtgagtttgttgcattggagtgggaaag |
226 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||| || || | |||||||| | | ||||| ||||| || |||||||| ||||||||||| |||| |
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| T |
2498608 |
catagatggaatcaacatggtcttggtggtgataatgttgttgatagttgtagaagtttgcatcctggtccagttagtttgttacattggagtggtaaag |
2498509 |
T |
|
| Q |
227 |
g |
227 |
Q |
| |
|
| |
|
|
| T |
2498508 |
g |
2498508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 227
Target Start/End: Complemental strand, 27101196 - 27101096
Alignment:
| Q |
127 |
cataggtggaatcaacatggacttggtggtgataattttcgtggtctttgtagaaatcttcatcccggtcctgtgagtttgttgcattggagtgggaaag |
226 |
Q |
| |
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||||| |||||||||||||| ||||||||||||||| || || | |||||||| | | ||||| ||||| || |||||||| ||||||||||| |||| |
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| T |
27101196 |
catagatggaatcaacatggtcttggtggtgataatgttgttgatagttgtagaagtttgcatcctggtccagttagtttgttacattggagtggtaaag |
27101097 |
T |
|
| Q |
227 |
g |
227 |
Q |
| |
|
| |
|
|
| T |
27101096 |
g |
27101096 |
T |
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